Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-21 seq1 107 1e-18 seq4 95.1 9e-15 seq6 89.7 4e-13 seq5 89.7 4e-13 >seq3 Length=6357299 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || ||||||| | || || |||||||| || | ||| |||| | || Sbjct 2332065 ATGCAAATTTTCGTTAAAACTCTTACTGGTAAAACCATCACATTAGAAGTTGAAGGCTCA 2332124 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | | |||| |||||| |||||||| ||| | || | ||||| Sbjct 2332125 GATAATATCGAGAACGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGACCAA 2332184 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | |||||||| || |||||| |||||||| ||| | | || ||||| Sbjct 2332185 CAAAGATTAATCTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGACTACAAC 2332244 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||||||||||||| | |||||| | ||| ||||||| Sbjct 2332245 ATTCAAAAGGAATCTACTCTTCATTTAGTATTAAGATTAAGAGGAGG 2332291 Score = 109 bits (120), Expect = 4e-19 Identities = 174/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || ||||||| | || || |||||||| || | ||| ||| | Sbjct 2332521 ATGCAAATTTTCGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTTGAATGTTCT 2332580 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || |||| ||||| |||||||||||| | || | | ||| Sbjct 2332581 GATAATATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGTATCCCACCAGATCAA 2332640 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || || || || |||||| |||||||| ||| | | ||||| ||| Sbjct 2332641 CAAAGATTAATTTTCGCAGGTAAACAATTAGAAGATGGCCGTACTCTTTCAGATTATAAT 2332700 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATAA 22073 ||||| |||||||||||||||||| | |||||| | ||| |||| ||| ||||| || || Sbjct 2332701 ATTCAAAAGGAATCTACTCTTCATTTAGTATTAAGATTAAGAGGTGGAAATTAAAAAAAA 2332760 Query 22074 AAACCATAAA 22083 | | ||||| Sbjct 2332761 ATAAAATAAA 2332770 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||||||||| || || ||||| || | ||| || | | || Sbjct 5640455 ATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCA 5640514 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || |||| ||| ||| || ||||| ||| | || | ||||| Sbjct 5640515 GATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAA 5640574 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || || ||||| |||||| |||||||| ||| | | |||||||| Sbjct 5640575 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 5640634 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| ||||| ||| | || | | ||| |||| || Sbjct 5640635 ATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGG 5640681 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || || ||||| || || ||||| |||| | Sbjct 5879005 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTATCACTTTGGAAGTTGAAGGTTCT 5878946 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || | ||| ||||| |||||||| ||| | || | | ||| Sbjct 5878945 GATAATATTGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAA 5878886 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | |||||||| || |||||| |||||||| ||| | | || |||||| Sbjct 5878885 CAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGACTACAAT 5878826 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||| ||||| ||| | || ||| | ||| |||| || Sbjct 5878825 ATTCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAGAGGTGG 5878779 >seq1 Length=4923596 Score = 107 bits (118), Expect = 1e-18 Identities = 175/250 (70%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 21811 ATATTTATAAGTAATAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCA 21870 ||||| ||| |||| | || ||||||||| ||| ||||||| | || || ||||| | Sbjct 2811290 ATATTAATA--TAATT-TCCAGAATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAA 2811346 Query 21871 TTACCGTGGAAACGGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATA 21930 | || | ||| |||| | || | | | || |||| |||||| |||| Sbjct 2811347 TAACATTAGAAGTTGAAGGTTCTGATAATATTGAGAATGTTAAAGCTAAAATTCAAGATA 2811406 Query 21931 AAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATT 21990 |||| ||| | || | | ||||| ||| | || ||||| || |||||| |||||||| Sbjct 2811407 AAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTTGCCGGTAAACAATTAGAAGATG 2811466 Query 21991 TAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTT 22050 ||| | | |||||||||||||| |||||||| ||||||||| | |||||| | | Sbjct 2811467 GCCGTACTTTATCAGATTACAATATTCAAAAGGAATCAACTCTTCATTTAGTATTAAGAT 2811526 Query 22051 TACGAGGAGG 22060 || |||| || Sbjct 2811527 TAAGAGGTGG 2811536 Score = 100 bits (110), Expect = 2e-16 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || || ||||| || || | ||| |||| | Sbjct 2811994 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACAATAACATTAGAAGTTGAAGGTTCT 2812053 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || |||| || || |||||||| ||| | || | | ||| Sbjct 2812054 GATAACATTGAAAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAA 2812113 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || ||||| || |||||| |||||||| ||| | | ||||||||| Sbjct 2812114 CAAAGATTAATTTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAAT 2812173 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATAA 22073 ||||| || ||||||||||| ||| | || ||| | ||| |||| ||| ||||| || || Sbjct 2812174 ATTCAAAAAGAATCTACTCTCCATTTAGTTTTAAGATTAAGAGGTGGAAATTAAAAAAAA 2812233 Query 22074 AAA 22076 ||| Sbjct 2812234 AAA 2812236 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || || |||||||| || | ||| |||| | Sbjct 2811766 ATGCAAATTTTTGTTAAAACTCTCACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 2811825 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || |||| ||||| |||||||| ||| | || | | ||| Sbjct 2811826 GATAATATCGAGAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAA 2811885 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | ||||| || || || |||||| |||||||| ||| | | ||||||||| Sbjct 2811886 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGATGGCCGTACTTTATCAGATTACAAT 2811945 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||||||||| ||| | || ||| | ||| |||| || Sbjct 2811946 ATTCAAAAAGAATCTACTCTCCATTTAGTGTTAAGATTAAGAGGTGG 2811992 >seq4 Length=5450249 Score = 95.1 bits (104), Expect = 9e-15 Identities = 173/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || || ||||| || ||| |||| |||| | Sbjct 5084164 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTATCACCTTGGAGGTTGAAGGATCT 5084105 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || |||| |||||| |||||||| ||| | || | | ||| Sbjct 5084104 GATAATATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 5084045 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | || || |||||||| |||||| |||||||| ||| | | ||||||||| Sbjct 5084044 CAACGTCTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAT 5083985 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATAA 22073 ||||| || ||||| ||||| || | || ||| | ||| |||| || | || ||| Sbjct 5083984 ATTCAAAAAGAATCAACTCTCCACTTAGTTTTAAGATTAAGAGGTGG-TCTT-----TAA 5083931 Query 22074 AAACCATAAATA 22085 |||| ||||||| Sbjct 5083930 AAACTATAAATA 5083919 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 || |||||||| ||| ||||||| | || || || || || || | ||| |||| Sbjct 5084623 AATATGCAAATCTTTGTTAAAACTCTCACTGGTAAGACTATCACTTTAGAAGTTGAAGGT 5084564 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || | | | || | ||| ||||| |||||||| ||| | || | | Sbjct 5084563 TCTGATAATATTGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCACCAGAT 5084504 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | || || |||||||| |||||| |||||||| ||| | | |||||| Sbjct 5084503 CAACAACGTCTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTAC 5084444 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| |||||||| |||||||| | || ||| | ||| |||| || Sbjct 5084443 AATATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGATTAAGAGGTGG 5084394 >seq6 Length=3602379 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || || ||||| || || | ||| |||| Sbjct 961491 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACTATCACATTAGAAGTCGAAGGTAGC 961550 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || |||| |||||| |||||||| ||| | || | | ||| Sbjct 961551 GACAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 961610 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | || || |||||||| |||||| |||||||| ||| | | ||||||||| Sbjct 961611 CAACGTCTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCAGATTACAAT 961670 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||| ||||||||| | || ||| | ||| |||| || Sbjct 961671 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 961717 >seq5 Length=5125352 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || || |||||||| || ||||| |||| Sbjct 2811202 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACATTGGAAGTTGAAGGTAGT 2811261 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || | ||| |||||| || ||||| ||| | || | | ||| Sbjct 2811262 GACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 2811321 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | ||||||||||| |||||| |||||||| ||| | | |||||||| Sbjct 2811322 CAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 2811381 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| ||||| ||| | || | | ||| |||| || Sbjct 2811382 ATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTAAGAGGTGG 2811428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124621049514