Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq5 96.9 4e-15 seq6 91.5 2e-13 >seq3 Length=6357299 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||||||| | | || ||||| | ||| ||||||||||| |||||||||| Sbjct 5641137 CCACCTCTTAATCTGAGAACTAAATGGAGTGTTGATTCCTTTTGAATGTTGTAATCAGAA 5641078 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || |||| || ||||| ||||| ||||| || || || || | ||| Sbjct 5641077 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGG 5641018 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || |||| | ||| |||||| ||| | || | | |||| || ||| || Sbjct 5641017 ATACCTTCTTTGT-CTTGAATTTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAAC 5640959 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || |||||||| || || || || |||||||| |||||||| Sbjct 5640958 TTCGAGTGTAATGGTTTTACCAGTGAGAGTTTTTACAAAAATTTGCAT 5640911 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | | ||||| || | || || ||||| ||||||||||||| Sbjct 5640454 ACCACCTCTTAATCTGAGGACCAAGTGGAGAGTTGATTCTTTTTGGATATTGTAATCAGA 5640395 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || ||||||||||| ||||| || || || || | ||| Sbjct 5640394 GAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGG 5640335 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| | ||| | |||| ||| | || | | |||| || ||| | Sbjct 5640334 AATAC-CTTCTTTATCTTGAATCTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAA 5640276 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| || || || || || || || |||||||||||||||||||| Sbjct 5640275 CTTCGAGTGTAATAGTCTTACCGGTGAGGGTCTTTACAAAGATTTGCAT 5640227 >seq5 Length=5125352 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | | || ||||| | ||| || ||||| || |||||||||| Sbjct 2812341 ACCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGA 2812282 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || ||||||||||| ||||| || || || || | ||| Sbjct 2812281 GAGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGG 2812222 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||||| |||||| ||||| | | | | || || ||| || Sbjct 2812221 AATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTATCACTACCTTCGAC 2812162 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || || || || |||||||||||||| Sbjct 2812161 TTCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 2812114 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | | || ||||| | ||| ||||||||||| |||||||||| Sbjct 2812797 ACCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 2812738 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || ||||||||||| ||||| || || || || | ||| Sbjct 2812737 GAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGG 2812678 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||||| |||||| ||| | | | | | || || ||| || Sbjct 2812677 AATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGAC 2812618 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| ||||| || |||| || || |||||||||||||| Sbjct 2812617 TTCCAAGGTGATAGTTTTACCTGTTAAAGTTTTAACAAAGATTTGCAT 2812570 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | | ||||| || | ||| ||||||||||| ||||| |||| Sbjct 2811657 ACCACCTCTTAATCTGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGA 2811598 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || ||||||||||| || | || || || || | ||| Sbjct 2811597 GAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGG 2811538 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCA 42159 | | || |||| | ||| |||| | || | | | || | | || || ||| | Sbjct 2811537 GATACCTTCTTTGT-CTTGAATTTTAGCTTTAACATTTTCAATGTTATCACTACCTTCAA 2811479 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||||||||| || || || || ||||||||||||||||| Sbjct 2811478 CCTCTAAGGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 2811430 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | | || ||||| | ||| ||||||||||| |||||||||| Sbjct 2811429 ACCACCTCTTAATCTAAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 2811370 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || |||||||| || || | || || || || | ||| Sbjct 2811369 AAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGTGG 2811310 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||| | ||| |||| | |||| | | | |||| || ||| | Sbjct 2811309 AATACCTTCTTTGT-CTTGAATTTTAGCCTTGACATTTTCAATGTTGTCACTACCTTCAA 2811251 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||||||||| || || || || || ||||| |||||||| Sbjct 2811250 CTTCCAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 2811202 >seq6 Length=3602379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | || || ||||| | || || ||||||||||||||||| | Sbjct 961718 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTGTAATCTGA 961659 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || |||||||| || ||||| || || || || | ||| Sbjct 961658 AAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGG 961599 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCA 42159 | | || ||| | ||| |||| | || | | | || | ||||||| ||| | Sbjct 961598 AATAC-CTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTGTCGCTACCTTCGA 961540 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| ||||| || || || || || ||||| |||||||| Sbjct 961539 CTTCTAATGTGATAGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 961491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212521603440