Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq6 102 8e-17 seq1 98.7 9e-16 seq3 95.1 1e-14 >seq5 Length=5125352 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || ||||| | || || ||||||||||| ||||| || Sbjct 2811884 CCACCTCTTAATCTTAAAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAG 2811825 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| |||||| | || |||| || ||||| || || Sbjct 2811824 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGG 2811765 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| || | | ||| | | |||| | || |||||| Sbjct 2811764 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGTTGTCAGAACCTTCGACT 2811705 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || |||| ||||||||||| || ||||| Sbjct 2811704 TCCAAGGTGATAGTTTTACCAGTCAAGGTTTTTACAAAGATTTGCAT 2811658 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | || ||||| | || || || |||||||||||||| || Sbjct 2812568 CCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCCTTTTGAATATTGTAGTCAGAG 2812509 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| |||||| | || |||| || ||||| || || Sbjct 2812508 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 2812449 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||| ||| |||| || | ||| | | | || | || ||||| Sbjct 2812448 ATACCTTCTTTGTCT-TGAATTTTGGCTTTGACATTTTCAATGTTATCAGAACCTTCGAC 2812390 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| ||||||||||| || ||||| Sbjct 2812389 TTCCAATGTGATGGTCTTACCAGTCAAGGTTTTTACAAAGATTTGCAT 2812342 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | ||||| || | || || || |||||||| ||||| || Sbjct 2811656 CCACCTCTTAATCTGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAG 2811597 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| |||||| | || |||| || ||||| || || Sbjct 2811596 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGG 2811537 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGT-TGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||| ||| |||| | | ||| | | | || ||| || || Sbjct 2811536 ATACCTTCTTTGTCT-TGAATTTTAGCTTTAACATTTTCAATGTTATCACTACCTTCAAC 2811478 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || |||||||||||||| || ||||| Sbjct 2811477 CTCTAAGGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 2811430 >seq6 Length=3602379 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || ||||| | || || |||||||||||||||||||| Sbjct 961717 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTGTAATCTGAA 961658 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| ||||| | || | || || ||||| || || Sbjct 961657 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGA 961598 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || | | ||| ||| || || | | ||| | | |||| ||| ||||| Sbjct 961597 ATACCTTCTTTAT-CTTGAATTTTGGCTTTAACATTTTCAATGTTGTCGCTACCTTCGAC 961539 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || |||||||| |||||||| ||||| Sbjct 961538 TTCTAATGTGATAGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 961491 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || ||||| | || || |||||||||||||| ||||| Sbjct 961489 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGAG 961430 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| |||||| | || |||| || ||||| || || Sbjct 961429 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGGGGA 961370 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || | | ||| ||| || || | | ||| | |||| ||| ||||| Sbjct 961369 ATACCTTCTTTAT-CTTGAATTTTGGCTTTAACATTTTCAATATTGTCACTACCTTCGAC 961311 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || |||||||| || ||||| ||||| Sbjct 961310 TTCTAATGTGATGGTTTTACCAGTAAGAGTTTTGACGAAAATTTGCAT 961263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || ||||| | || || |||||||||||||| || || Sbjct 961261 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCTGAA 961202 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| |||||| | || |||| || ||||| || || Sbjct 961201 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGGGGA 961142 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || | | ||| | | || || | | ||| | | || | || || || Sbjct 961141 ATACCTTCTTTAT-CTTGAATCTTGGCTTTAACATTTTCAATATTATCTGAACCTTCAAC 961083 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTA 127119 ||| | ||| | ||||| || || |||||||| |||||||| ||||| |||| Sbjct 961082 TTCTAAGGTGATAGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCATTCCTTA 961029 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | ||||| || || ||||| | || || |||||||||||||| || || Sbjct 961946 TCCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCTGA 961887 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| |||| ||||| |||||| | || |||| || ||||| || || Sbjct 961886 AAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGG 961827 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || || | | ||| ||| || || | | ||| | | || | || || | Sbjct 961826 GATACCTTCTTTAT-CTTGAATTTTGGCTTTTACATTTTCAATATTATCTGAACCTTCAA 961768 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| || || | |||||| ||||| || ||||| Sbjct 961767 CTTCCAAAGTGATAGTTTTACCTGTTAAAGTTTTAACAAAGATTTGCAT 961719 >seq1 Length=4923596 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| ||||| ||||| | ||||| |||||||||||||||||||| Sbjct 2811992 CCACCTCTTAATCTTAACACTAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCTGAT 2811933 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| |||| ||||| || ||| | || | || || ||||| || || Sbjct 2811932 AAAGTACGGCCATCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 2811873 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || |||||| || | | |||| | || | || || ||| Sbjct 2811872 ATACCTTCTTTATCTTGGATTTTAGCTTTAACATTCTCGATATTATCAGAACCTTCAACT 2811813 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| ||||| |||||||| |||||||| ||||| Sbjct 2811812 TCTAATGTGATGGTTTTACCGGTGAGAGTTTTAACAAAAATTTGCAT 2811766 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | ||||| || || ||||| | ||||| |||||||||||||||||||| Sbjct 2812221 TCCACCTCTTAATCTTAAAACTAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCTGA 2812162 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| |||| ||||| || || | || |||| || ||||| || || Sbjct 2812161 TAAAGTACGACCATCTTCTAATTGTTTACCGGCAAAAATTAATCTTTGTTGATCTGGTGG 2812102 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || || ||| || || | | ||| | | | || | || || || Sbjct 2812101 AATACCTTCTTTATCTTGGATCTTGGCTTTAACATTTTCAATGTTATCAGAACCTTCAAC 2812042 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || |||||||| ||||| || ||||| Sbjct 2812041 TTCTAATGTTATTGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 2811994 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| ||||||||||| | || || || ||||||||||| ||||| Sbjct 2811764 CCACCTCTTAATCTTAACACCAAATGAAGAGTTGATTCCTTTTGAATATTATAATCTGAT 2811705 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| || ||| | || | || || ||||| || || Sbjct 2811704 AAAGTACGACCATCTTCTAATTGTTTACCTGCGAAAATAAGACGTTGTTGATCTGGTGGA 2811645 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || |||||| || | | |||| | || | || || || Sbjct 2811644 ATACCTTCTTTATCTTGGATTTTAGCTTTAACATTCTCGATATTATCAGAACCTTCAACC 2811585 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || |||||||| |||||||| ||||| Sbjct 2811584 TCTAAAGTGATAGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 2811538 >seq3 Length=6357299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | ||||| | || ||||| | || || || |||||||| |||||||| Sbjct 5641138 TCCACCTCTTAATCTGAGAACTAAATGGAGTGTTGATTCCTTTTGAATGTTGTAATCAGA 5641079 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| |||| ||||| || ||| | || | || || ||||| || || Sbjct 5641078 AAGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGG 5641019 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || ||||| ||| ||| || || | | || | | |||| ||| || | Sbjct 5641018 GATACCTTCTTTGTCT-TGAATTTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAA 5640960 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| || | ||||| || || ||||||||||||||||| ||||| Sbjct 5640959 CTTCGAGTGTAATGGTTTTACCAGTGAGAGTTTTTACAAAAATTTGCAT 5640911 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || ||||| | || || ||||||||||||||||| || Sbjct 5878779 CCACCTCTTAATCTTAAAACTAAATGGAGAGTGGATTCTTTTTGAATATTGTAGTCAGAA 5878838 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| || || |||| |||| || ||||| || || Sbjct 5878839 AGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGATCTGGTGGA 5878898 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || |||||| ||| | | ||| | | || | || || ||| Sbjct 5878899 ATACCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCAATATTATCAGAACCTTCAACT 5878958 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || |||||||| ||||| || ||||| Sbjct 5878959 TCCAAAGTGATAGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 5879005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | ||||| || || ||||| | ||||| || ||||||||||| ||||| Sbjct 2332748 TCCACCTCTTAATCTTAATACTAAATGAAGAGTAGATTCCTTTTGAATATTATAATCTGA 2332689 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| |||| ||||| || ||| | || |||| || ||||| || || Sbjct 2332688 AAGAGTACGGCCATCTTCTAATTGTTTACCTGCGAAAATTAATCTTTGTTGATCTGGTGG 2332629 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| || || |||||| || | | ||| | | || | || || || Sbjct 2332628 GATACCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATATTATCAGAACATTCAAC 2332569 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || |||||||| || ||||| ||||| Sbjct 2332568 TTCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACGAAAATTTGCAT 2332521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500556305840