Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq5 120 2e-22 seq3 107 1e-18 seq6 93.3 3e-14 seq1 91.5 1e-13 >seq5 Length=5125352 Score = 120 bits (132), Expect = 2e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 42511 TATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATG 42570 ||| |||||||||||||||| ||| || | |||||||| ||| || |||||||| | Sbjct 3992717 TATATTACCTAAATCACCAACATGACGATTTTCATCATTTGGTGAACCATGTTCTTTTTT 3992658 Query 42571 AAAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATG 42630 ||| ||||||||||| | || || ||| ||| |||||||| |||||||||||||| || Sbjct 3992657 AAATGGATTAAAATGAGCTCCTGCTGATAAACACCCATTGGTTGTATCTCCAAATTCGTG 3992598 Query 42631 TATATGAAAACCGTGATAACC 42651 | |||||| || || | ||| Sbjct 3992597 AACATGAAATCCATGTTTACC 3992577 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| | |||| ||||||||| || || || || | | | || |||| || Sbjct 2811866 ACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGAGTACGACCATCTTCT 2811807 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || | |||||||| | || ||||| | || | ||||||||||| Sbjct 2811806 AATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 2811747 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 ||||| ||||| | | | |||| | | ||| || ||||| || || |||||| Sbjct 2811746 ATTTTGGCTTTAACATTTTCAATGTTGTCAGAACCTTCGACTTCCAAGGTGATAGTTTTA 2811687 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || |||||||| ||||| ||||| Sbjct 2811686 CCAGTCAAGGTTTTTACAAAGATTTGCAT 2811658 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || ||||| | |||| ||| ||||| || || ||||| | | | || |||| Sbjct 2812781 AGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTACGACCATCT 2812722 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || |||||||| || | ||||| | ||| || ||||| | || | ||||||||||| Sbjct 2812721 TCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCT 2812662 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||||| | | | | || | ||| || ||||| || || ||| Sbjct 2812661 TGGATTTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACTTCCAAGGTGATAGTT 2812602 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||||||||| || ||||| ||||| Sbjct 2812601 TTACCTGTTAAAGTTTTAACAAAGATTTGCAT 2812570 >seq3 Length=6357299 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | | ||| ||||| | ||| ||| ||||| ||||||||||| | Sbjct 2332519 CCACCTCTCAATCTTAATACTAAATGAAGAGTTGATTCCTTTTGAATATTATAATCTGAT 2332460 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| || |||||||| || |||| ||||| | || ||||| | || Sbjct 2332459 AAAGTACGACCATCTTCTAATTGTTTACCTGCAAAGATTAATCTTTGTTGATCTGGTGGG 2332400 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || ||||| ||||| || | | | |||| | ||| || Sbjct 2332399 ATACCTTCTTTATCTTGGATTTTAGCTTTAACATTCTCGATATTATCTGAACCTTCAACT 2332340 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| ||||||||||| || | |||||| ||||| || ||||| Sbjct 2332339 TCCAAAGTGATTGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 2332293 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| ||||| || |||||||||| ||| || |||| || |||||||| ||| |||| Sbjct 3722590 TTCCTTTTGGATGTTATAATCGGATAAAGTACGACCATCTTCTAATTGTTTACCGGCAAA 3722649 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | ||| || ||||| | || | ||||||||||| || || ||| | | Sbjct 3722650 GATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTT 3722709 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | |||||| | ||| || || | ||| || |||||||| ||||| ||||| || Sbjct 3722710 TTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAAC 3722769 Query 39708 GAAGATCTGCAT 39719 |||||| ||||| Sbjct 3722770 GAAGATTTGCAT 3722781 >seq6 Length=3602379 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| | ||| ||||||||| |||||||| || | | | || |||| || Sbjct 961927 ACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCT 961868 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || | |||||||| | || ||||| | || | |||||||| || Sbjct 961867 AATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGA 961808 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 ||||| ||| | | | | | |||| | ||| || |||||||| || |||||| Sbjct 961807 ATTTTGGCTTTTACATTTTCAATATTATCTGAACCTTCAACTTCCAAAGTGATAGTTTTA 961748 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||||||||| || ||||| ||||| Sbjct 961747 CCTGTTAAAGTTTTAACAAAGATTTGCAT 961719 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| | ||| ||||||||| ||||||||||| | | | || |||| || Sbjct 961471 ACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGAGAGAGTACGACCATCTTCT 961412 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || | |||||||| | || ||||| | ||| | |||||||| || Sbjct 961411 AATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGGGGAATACCTTCTTTATCTTGA 961352 Query 39631 ATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTT 39688 ||||| |||| || || || ||| || | ||| || || || || || |||| Sbjct 961351 ATTTTGGCTTTAACATTTTCAATATTGTCACT--ACCTTCGACTTCTAATGTGATGGTTT 961294 Query 39689 TACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || | |||||| ||||| || ||||| Sbjct 961293 TACCAGTAAGAGTTTTGACGAAAATTTGCAT 961263 >seq1 Length=4923596 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGA 42571 ||||||||||||||||||| ||| || |||||||| || | || || | |||| | Sbjct 338555 ATGTTACCTAAATCACCAACATGACGATCTTCATCTGATGGAGCACCATGATTTTTACCA 338496 Query 42572 AAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGT 42631 || || ||||||||| |||||| ||| |||||||| ||||| ||||| |||| Sbjct 338495 AATGGGTTAAAATGTGGACCAGCACTAACACAACCATTGGTTGTATCACCAAAAGCATGA 338436 Query 42632 ATATGAAAACCGTGATAACC 42651 | || |||||||| | ||| Sbjct 338435 ACGTGGAAACCGTGTTCACC 338416 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39510 TACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTC 39569 ||| ||||| | ||| ||| ||||| ||||| ||||| | ||| || |||| || Sbjct 2811519 TACTAAATGAAGAGTTGATTCCTTTTGAATATTGTAATCTGATAAAGTACGGCCATCTTC 2811460 Query 39570 CAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCA 39629 |||||||| ||| |||||||||| | || ||||| | || | |||||||| || Sbjct 2811459 TAATTGTTTACCGGCAAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTG 2811400 Query 39630 TATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTT 39689 ||||| ||||| || | | | || | | ||| || || || || |||||||| Sbjct 2811399 AATTTTAGCTTTAACATTCTCAATATTATCAGAACCTTCAACTTCTAATGTTATTGTTTT 2811340 Query 39690 ACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || | |||||| || || || ||||| Sbjct 2811339 ACCAGTAAGAGTTTTAACAAAAATTTGCAT 2811310 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||||||| | ||| ||| ||||| ||||||||||| | ||| || |||| || Sbjct 2811746 ACCAAATGAAGAGTTGATTCCTTTTGAATATTATAATCTGATAAAGTACGACCATCTTCT 2811687 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || | ||||| | ||| || ||||| | || | |||||||| || Sbjct 2811686 AATTGTTTACCTGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGG 2811627 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 ||||| ||||| || | | | || | | ||| || || ||||| || |||||| Sbjct 2811626 ATTTTAGCTTTAACATTCTCGATATTATCAGAACCTTCAACCTCTAAAGTGATAGTTTTA 2811567 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | |||||| || || || ||||| Sbjct 2811566 CCAGTGAGAGTTTTAACAAAAATTTGCAT 2811538 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| | ||| ||||||||| ||||| ||||| | ||| || |||| || Sbjct 2812202 ACTAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCTGATAAAGTACGACCATCTTCT 2812143 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| ||| |||||||||| | || ||||| | || | |||||||| || Sbjct 2812142 AATTGTTTACCGGCAAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGG 2812083 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || || ||||| | | | | || | | ||| || || || || ||||||||| Sbjct 2812082 ATCTTGGCTTTAACATTTTCAATGTTATCAGAACCTTCAACTTCTAATGTTATTGTTTTA 2812023 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | |||||| || ||||| ||||| Sbjct 2812022 CCAGTGAGAGTTTTAACAAAGATTTGCAT 2811994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369426423753