Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5 125 7e-24 seq3 113 5e-20 seq6 89.7 5e-13 seq1 86.0 6e-12 >seq5 Length=5125352 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || |||||||||||| | || ||||| | | Sbjct 2812114 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTCGAAGGTAGT 2812173 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| ||||||| |||||||| || ||||| | || ||| Sbjct 2812174 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2812233 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| ||| || ||||| | || || | || || ||| || |||||| Sbjct 2812234 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAAC 2812293 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || || ||||| || || | || ||||| || Sbjct 2812294 ATCCAAAAAGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGG 2812340 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| ||||| || |||||||||||| | || || || | | Sbjct 2811430 ATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTTGAAGGTAGT 2811489 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| |||||| ||||| | |||||||| || || || | || ||| Sbjct 2811490 GATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAA 2811549 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | |||| ||| || ||||| | || || | || || ||| ||||||||| Sbjct 2811550 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 2811609 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||| | || || || ||||| || | || ||||| || Sbjct 2811610 ATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGTGG 2811656 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| | || || ||||| |||||| | || ||||| | | Sbjct 2811658 ATGCAAATCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCT 2811717 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| |||||| ||||||| |||||||| || || || | || ||| Sbjct 2811718 GACAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 2811777 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | |||| ||| || ||||| | || || | || || ||| ||||||||| Sbjct 2811778 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 2811837 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || ||||| || | | || ||||| || Sbjct 2811838 ATTCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAGAGGTGG 2811884 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || || ||||||||| | || || || | | Sbjct 2811886 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAGACCATCACCTTAGAGGTTGAAGGTAGT 2811945 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| ||||||| |||||||| || || || | || ||| Sbjct 2811946 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 2812005 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | |||| ||| || ||||| | || || | || || ||| ||||||||| Sbjct 2812006 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 2812065 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || || ||||| || | | || ||||| || Sbjct 2812066 ATCCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAGAGGTGG 2812112 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || ||||||||||| | || || || | | Sbjct 2811202 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACATTGGAAGTTGAAGGTAGT 2811261 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||| | |||||||| || ||||| | || ||| Sbjct 2811262 GACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 2811321 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | || || ||||| | || || | || || || || |||||| Sbjct 2811322 CAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 2811381 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||| | || || ||||| || || | || ||||| || Sbjct 2811382 ATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTAAGAGGTGG 2811428 >seq3 Length=6357299 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || ||||||||||| | || || || | | Sbjct 2331837 ATGCAAATTTTCGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 2331896 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||||| ||||||| || ||||| || || || | |||||| Sbjct 2331897 GATAACATCGAGAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCAA 2331956 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| ||| || ||||| | || || | || || ||| ||||||||| Sbjct 2331957 CAACGTCTTATTTTCGCAGGTAAACAATTAGAAGATGGTCGTACTCTCTCAGACTACAAC 2332016 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||| | || || ||||| || | | || ||||| || Sbjct 2332017 ATTCAAAAGGAATCAACTCTTCATTTAGTATTAAGATTAAGAGGTGG 2332063 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| ||||| | || || ||||||||||| |||| || || | Sbjct 3722784 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 3722725 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | ||||| | |||| || || | |||||||| || || || | || Sbjct 3722724 TCAGACAACATCGAAAACG-TCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGA 3722666 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| || || || | || || ||||| | || || | || || | ||| || Sbjct 3722665 TCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTA 3722606 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||| | || || || || || | | || ||||| || Sbjct 3722605 TAACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 3722555 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || ||||||||||| | || || || | | | Sbjct 2332065 ATGCAAATTTTCGTTAAAACTCTTACTGGTAAAACCATCACATTAGAAGTTGAAGGCTCA 2332124 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| |||||| ||||| | || ||||| || ||||| | ||||| Sbjct 2332125 GATAATATCGAGAACG-TTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGACCA 2332183 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || ||||| | || || | || || | |||||||| Sbjct 2332184 ACAAAGATTAATCTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGACTACAA 2332243 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||||||| | || || ||||| || | | || ||||| || Sbjct 2332244 CATTCAAAAGGAATCTACTCTTCATTTAGTATTAAGATTAAGAGGAGG 2332291 >seq6 Length=3602379 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || ||||||||||| | || ||||| | | Sbjct 961263 ATGCAAATTTTCGTCAAAACTCTTACTGGTAAAACCATCACATTAGAAGTCGAAGGTAGT 961322 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||||| ||||| | || ||||| || |||||| | || ||| Sbjct 961323 GACAATATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAA 961382 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | |||| ||| || ||||| | || || | || || ||| || || || Sbjct 961383 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTATAAT 961442 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || ||||| || | | || ||||| || Sbjct 961443 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 961489 >seq1 Length=4923596 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || ||||||||||| | || || || | | Sbjct 2811766 ATGCAAATTTTTGTTAAAACTCTCACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 2811825 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||||| ||||||| || ||||| || ||||| | || ||| Sbjct 2811826 GATAATATCGAGAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAA 2811885 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| ||| || ||||| | || || | || || | || ||||| Sbjct 2811886 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGATGGCCGTACTTTATCAGATTACAAT 2811945 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || ||||| ||| | | || ||||| || Sbjct 2811946 ATTCAAAAAGAATCTACTCTCCATTTAGTGTTAAGATTAAGAGGTGG 2811992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172543661440