Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4 242 5e-59 seq1 87.8 2e-12 >seq4 Length=5450249 Score = 242 bits (268), Expect = 5e-59 Identities = 1135/1775 (64%), Gaps = 78/1775 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| ||||||| ||||| ||| | || ||||||||||| ||||| | || |||| Sbjct 1504159 CCACAACACATGTTGATGCGTGTCTCCATTGGTATCCATGGCGAAGACCTCGAATCTGCC 1504218 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTA-TGTTCATCCACGCAACACCAACCCTCTT 111730 | | || ||| | | | | | | | | |||||| || || |||||||| || || Sbjct 1504219 ATCAACACCTAC-AAACGTTTGTCTGAGAAATTGTTCACTCATGCCACACCAACTCTATT 1504277 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||||||| ||| |||||||| ||||||| | || || |||||||| Sbjct 1504278 CAACGCAGGTACACCATCACCACAAATGTCATCTTGTTTCTTGGTTCAAATGAAGGAGGA 1504337 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 ||||||| |||| ||||| | |||| | | ||||||| | || |||||| | || || Sbjct 1504338 TTCAATCGATGGTATTTATGACACTTTGAAACAATGTGCACTCATTTCAAAGAGTGCCGG 1504397 Query 111851 TGGTATCGGGA-TGCACATCCATGATGTCAGAGC--CAACAAGTCTCGTATTAGAGGTAC 111907 |||||| || | |||| | ||| | | | || | ||| | |||| | ||||| Sbjct 1504398 TGGTATTGGTATTGCA-GTTCATAAGATTCGTGCTGCTCAAAG--TTATATTCGTGGTAC 1504454 Query 111908 AAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 |||||| ||| || ||||| | | ||||||||||| || || || | || || || | Sbjct 1504455 CAATGGTACAAGCA-ATGGTTTGGTGCCAATGCTTCGTGTTTTCAATGATACTGCTCGTT 1504513 Query 111967 ATGTAAACCAAGCTG--GGC-GTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | || | |||| || ||| | ||||| | | || || || | || ||||||| Sbjct 1504514 ACGTCGATCAAGGTGGTGGCAAGAGAAAGGGTGCCTTTGCCGTTTACTTGGAACCATGGC 1504573 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 |||| ||| || | || || |||| | ||| ||| | || ||| | | Sbjct 1504574 ACGCTGATGTCTTTGAATTTATTGATCTAAAGAAAAACACTGGTAAGGAAGAGATGAGAG 1504633 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 | ||||| |||| ||||| ||| || ||| | || ||| | | || || | | Sbjct 1504634 CTAGAGATCTATTCTATGCTCTTTGGGTTAGTGATATTTTTATGGAACGTGTCGAACAAA 1504693 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 |||| ||||| | |||||||||||| | | ||||| ||||| | || | | Sbjct 1504694 ATGGCGATTGGGCCCTCTTTTGTCCAAATGAAGCACCAGGTCTTGCTGAAACTCACTCAG 1504753 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGC 112263 |||| | || ||||| || ||||| | | | | | | | ||| ||| Sbjct 1504754 AGGAACATCGTGCTCTCTATTTGAAATACGAAGCA-ACACCTGACCTCCCAAGAC-GTGT 1504811 Query 112264 C-----AGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | |||| || | ||| || ||| | |||||||| || |||||||| || Sbjct 1504812 CATTAAAGCTCAAGAACTTTGGTTCGCCATTATGGAGTCTCAAGTTGAAACTGGTACTCC 1504871 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 || || | ||||| || |||||||| || |||||||||||||| ||| || Sbjct 1504872 ATTCATTTTGTACAAGGATGCCTGTAATGCTAAATCCAATCAAAAGAATTTAGGTACCAT 1504931 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 | ||| || || ||||| || ||| | ||| ||| |||||| | || || Sbjct 1504932 TAGTAGTAGTAATCTTTGTACCGAGATCATTCAATACACATCACCAGATGAAATCGCCGT 1504991 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT---------------------GGA 112477 ||||| || || || || || || || |||| ||| || Sbjct 1504992 TTGTAATCTTGCCTCTATAGCACTTCCAAAGTTTGTTCGTCAAAAAGTAGGCTCAACCGA 1505051 Query 112478 TCC-AGAGACAAAGACATTTGATTATGAAAAACT--------CCACGAAGTTACGAAAAC 112528 ||| | ||| ||||| ||||| || || || ||| |||||| | ||| Sbjct 1505052 TCCAAAAGAAAAAGA-GTTTGACCATCAATTCCTATTTGAAATCACAAAGTTA--ATAAC 1505108 Query 112529 TGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGC 112585 ||| || || ||| | || ||| | || | ||| || || |||| || Sbjct 1505109 CGTC------AATCTTAACGTTATCATCGATCGTAACTATTATCCAGTGGCTGAG---GC 1505159 Query 112586 TCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGT 112645 | | || ||| | ||||| |||||||||||| | ||| | |||||| | || ||||| Sbjct 1505160 TAAAACTTCAAATCTTAGACATCGTCCAATTGGTATTGGTATTCAAGGTTTGGCCGATGT 1505219 Query 112646 ATTCATTCTTTGTCGCCACGCATTT-GATTCCGACGAAGCGAAGGAAATCAATGCGCGTA 112704 |||||| || | || ||| ||| | | || || | |||| | Sbjct 1505220 TTTCATTAAAATGCG-TATGCCTTTCGATAGTGTTGCCGCCGCTAAATTAAATGTTGAAA 1505278 Query 112705 TATTTGAGACAATGTATCACGCCGCTCTTGA-GGCGAGTTCGGAGTTGGCAGAGGTTGAT 112763 | || || || || |||||| |||| || | || ||||| |||| Sbjct 1505279 TCGCCGAAACCATTTACTTTGCCGCT-TTGACTGCCTCTCATGAATTGGCGATCCGTGAT 1505337 Query 112764 GGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATG 112823 ||| | |||||| | || | ||||| |||||||| |||| | || |||||||||||| Sbjct 1505338 GGTACCTATGAATCTTTCAAAGGTTCACCAGCTTCCAAAGGTATCCTCCAATTTGATATG 1505397 Query 112824 TGGGAAGGTGAGACCAAGCT-TCACTACGACTGGGACGCTCTCAAGGAACGCA---TCAA 112879 | |||| || | |||||| | || | | |||| | || ||||| || |||| Sbjct 1505398 T-GGAATGTTACACCAAGTTCTCGTTGGAATTGGGCAGAGCTAAAGGATAACATTGTCAA 1505456 Query 112880 GGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 112939 || ||| | ||||| || | || |||||||||||||| || || || || Sbjct 1505457 TAAGGGTGGTTTACGTAATTCACTCCTCATTGCACCAATGCCAACCGCTTCAACAAGTCA 1505516 Query 112940 AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAAC 112999 |||| | ||||| ||||||||||||||||| ||||| | ||||| || | | Sbjct 1505517 AATCCTTGGTAACAATGAATGCTTTGAACCTTACACTTCCAACATTTACAGTCGTCGTGT 1505576 Query 113000 CCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGG 113059 | || || || || ||||||||||| || | | || || |||| || ||||| Sbjct 1505577 TTTAGCAGGTGAATTCACAATTGTCAACAAACAATTACTCGAAGATCTCATGGA-ATTGG 1505635 Query 113060 TC-TCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATA 113118 | | ||||| || |||||| ||| || || || |||||||||||||| | Sbjct 1505636 GCATTTGGTCACCAGAGATGAAGAATCAAATCGTTGCTGCACGTGGTTCCATTCAATCCA 1505695 Query 113119 TTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGA 113178 | | | || || ||||| | || | | || ||||||||||||||| | | Sbjct 1505696 TCGGTGGCATCCCTGATGATTTGAAAGAACTCTATAAAACAGTTTGGGAAATC-CGTCAA 1505754 Query 113179 AGGA-TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATG 113237 || | | |||| || ||||| || ||||||||| ||||| ||||||||||||||| | Sbjct 1505755 AGAACTCTCATCGATATGGCTGCTGATCGTGGTGCTTTCATCGATCAAAGTCAAAGTTTC 1505814 Query 113238 AATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGG 113297 ||| | ||||| | ||||| | | || ||| | || ||||| | ||| ||| Sbjct 1505815 AATGTTTTCATTGCTGAACCAACCTTTGCTAAACTCACCTCAATGCATTTCTACTCATGG 1505874 Query 113298 AAGAAGGGTCTCAAAACGGGGATGTATTACCTCCG 113332 ||||| ||| | || || || ||||| || || || Sbjct 1505875 AAGAAAGGTTTAAAGACTGGTATGTACTATCTTCG 1505909 Score = 113 bits (124), Expect = 6e-20 Identities = 309/465 (66%), Gaps = 15/465 (3%) Strand=Plus/Plus Query 15923 GATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA--TCAAAACCA 15980 ||||||| | ||| ||||| |||| ||||||| | | ||| | | ||||||| Sbjct 1752670 GATATCAGGTCTATTGGTTGCAGCGAGTACAACAACA--TTCTTCAATGGTTTAAAACCA 1752727 Query 15981 TCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCG---CTGGCATA 16037 ||||| || ||| | || || | || | || ||||||||||||| | | | | Sbjct 1752728 TCCATTTCAACCAACAATTGATTTAATGTATTCTCACGTTCATCATTCGAACCAGAGAAA 1752787 Query 16038 CCACCAGCACTGCGTTGCTTTCCCA-CGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 ||||| || | ||||| | ||| | |||||||| ||||| ||||| || || ||||| Sbjct 1752788 CCACCTTTACCTC-TTGCTCTACCAACTGCATCAATTTCATCGATGAATACAATACATGG 1752846 Query 16097 TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 16156 | ||| | | ||| |||||| ||||| | ||||| | || ||||||||||| Sbjct 1752847 TGCATTCTTTCTAGCCTGTTCAAATAGATCTCTAACACGTGATGGACCAACACCAACAAA 1752906 Query 16157 CATCTCCACAAAGTTTGCGGCGGAACAT-TGGA--TGAAGGGGACATTAGATTCACCCGC 16213 |||||| || || | || | || | | || ||| || ||||| | |||||| || Sbjct 1752907 CATCTCTACGAAATCTGAACC---ACTTGTAGAATAGAATGGTACATTTGCTTCACCAGC 1752963 Query 16214 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCG 16273 | ||| || | | ||| ||||| |||||||| ||| | | | ||||||| Sbjct 1752964 GGTTGCTTTAGCAATCAAAGTTTTACCAGTACCTGGTGGACCAACTAAAATAGCACCTCT 1753023 Query 16274 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 ||| ||||| || ||| | || | || ||| || | ||| | ||| | |||| || Sbjct 1753024 TGGTATCTTTGCACCAATGTCATGGAATTTCTTTGGATTCTTTAAAAAGTTTACAAATTC 1753083 Query 16334 TTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378 ||| | ||| |||| || | ||| || | |||||| |||| Sbjct 1753084 TTCAATCTCAACTTTAGCTTCACCAAGACCTGCTACATCGCTAAA 1753128 Score = 109 bits (120), Expect = 7e-19 Identities = 266/395 (67%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 13599 TATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGGAG 13658 |||||||| || | || || | | |||||| ||| | ||| |||||| ||| Sbjct 2062605 TATCAAGCTTCAACCTCTGAATTATATGGTAAAGTTCAAGAGATTCCACAATCAGAGACC 2062546 Query 13659 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTA 13718 ||||| ||||| ||||| || |||| ||| ||||| || ||||| |||| Sbjct 2062545 ACACCATTCTATCCACGTTCACCATACGCTGTCGCAAAGCAATATGCCTATTGGATCGTT 2062486 Query 13719 AAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAA 13778 || || || ||| |||||| ||| |||||| || ||| | ||||| |||||| Sbjct 2062485 GTAAACTATCGTGAGGCTTACGATATGTATGCATGTAATGGTATCTTATTCAATCATGAA 2062426 Query 13779 TCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAGG-GTATCAAACAAA 13836 ||||| | ||||| || ||||| || | ||||| || || || | | Sbjct 2062425 TCACCACGTAGAGGTCCAACTTTTGTAACTAGAAAGATCACTCGTTTCGTTGCTGGTATT 2062366 Query 13837 TCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGG 13896 |||| || || | | | ||| | | |||||||| || ||||| | | ||||||| Sbjct 2062365 GCATGT-GGTAGAGATGAAATTCTCT-ACTTGGGTAATATCAACGCTAAACGTGATTGGG 2062308 Query 13897 GTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GAC 13955 ||||||| | || || |||||||| |||||| | ||| | |||||||| |||||| || Sbjct 2062307 GTCACGCTAGAGATTACGTTGAAGCAATGTGGTTAATGTTACAACAAGA-GAAGCCAGAA 2062249 Query 13956 GAATATGTAGTAGCAACGGGTGAGACCCATTCAGT 13990 || | || | || || ||||| || |||||||| Sbjct 2062248 GATTTCGTTATTGCCACTGGTGAAACTCATTCAGT 2062214 >seq1 Length=4923596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || |||| |||||| ||||||||||| ||||| |||||| ||| | | ||| | ||| Sbjct 216608 CCAACGGAATCAATTTCATCAATGAATACGATACATGGTGAATTCTTTCTTGCGGCCTCA 216667 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 16156 ||||| || |||||||| || || || ||||||||||| Sbjct 216668 AAGAGTTCACGTACACGTTTTGCACCAACACCAACAAA 216705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742081869520