Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4 163 3e-35 >seq4 Length=5450249 Score = 163 bits (180), Expect = 3e-35 Identities = 297/433 (69%), Gaps = 4/433 (1%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 |||||||| |||||||| || || | ||| |||||||| ||| | ||||||||| | | Sbjct 1505909 CGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCATGAGTAGAAATGCATTGAGGTG 1505850 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACT--GATCGATGA 109525 ||||| | || || || | || || | || | ||| |||| ||||||||| Sbjct 1505849 AGTTTAGCAAAGGTTGGTTCAGCAATGAAAACATTGAA--ACTTTGACTTTGATCGATGA 1505792 Query 109526 ATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCT 109585 | |||||||||||| ||||| ||||||| | |||| | |||||||| || || | Sbjct 1505791 AAGCACCACGATCAGCAGCCATATCGATGAGAGTTCTTTGACGGATTTCCCAAACTGTTT 1505732 Query 109586 TGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCT 109645 | || | | || | |||||| || ||| | ||||| |||||| || |||| || Sbjct 1505731 TATAGAGTTCTTTCAAATCATCAGGGATGCCACCGATGGATTGAATGGAACCACGTGCAG 1505672 Query 109646 TCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAA 109705 || || ||| |||||||||| ||||| | || | | ||||||| || | | Sbjct 1505671 CAACGATTTGATTCTTCATCTCTGGTGACCAAATGCCCAATTCCATGAGATCTTCGAGTA 1505612 Query 109706 GATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCG 109765 || |||||||| | |||||||| || | || || ||| ||||| | | Sbjct 1505611 ATTGTTTGTTGACAATTGTGAATTCACCTGCTAAAACACGACGACTGTAAATGTTGGAAG 1505552 Query 109766 TGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGG 109825 |||| ||||| || || |||||||| || |||||||| || ||||| || ||||| | Sbjct 1505551 TGTAAGGTTCAAAGCATTCATTGTTACCAAGGATTTGACTTGTTGAAGCGGTTGGCATTG 1505492 Query 109826 GAGCCATGAGAAG 109838 | || ||||| || Sbjct 1505491 GTGCAATGAGGAG 1505479 Score = 122 bits (134), Expect = 1e-22 Identities = 352/534 (66%), Gaps = 11/534 (2%) Strand=Plus/Minus Query 110694 TAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC 110753 ||| || | ||| || | || ||| | |||||||||||| | || || || | || || Sbjct 1504602 TAGATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACGGCAAAGGCACC 1504543 Query 110754 CTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCAT 110810 ||| | | ||| | || | || || || || || ||||||| || | ||||| Sbjct 1504542 CTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCAT 1504483 Query 110811 AGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTG--GCACGA 110868 || | | |||| | | |||||| ||||| | ||| |||| | |||||| Sbjct 1504482 TGGCACCAAACCATTGCTTGTACCATTGGTACCACGAATATA--ACTTTGAGCAGCACGA 1504425 Query 110869 ATGTCGTGGATATGCA-TACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGT 110927 || | || | |||| ||||||||||||| || | ||| ||| ||||||| | | | Sbjct 1504424 ATCTTATGAAC-TGCAATACCAATACCACCGGCACTCTTTGAAATGAGTGCACATTGTTT 1504366 Query 110928 GAGTGTACCATAAATACCATCAATCGAATCTGCCTT-GTTGGCAATTAGAAAGCAAGAAG 110986 | || ||||||||||||| || ||||| |||| || | | ||||| ||||| | Sbjct 1504365 CAAAGTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAA-CAAGATG 1504307 Query 110987 ACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGAC 111046 |||| || || || || || || ||||| || || ||||| |||||| |||||| Sbjct 1504306 ACATTTGTGGTGATGGTGTACCTGCGTTGAATAGAGTTGGTGTGGCATGAGTGAACAATT 1504247 Query 111047 CTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAA 111106 | |||| ||||| |||| || || || | |||| || || ||||||| Sbjct 1504246 TCTCAGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCCATGGATACCAA 1504187 Query 111107 TGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAA 111166 ||| || ||||| ||||| | ||| || |||| | || |||| | ||| |||| Sbjct 1504186 TGGAGACACGCATCAACATGTGTTGTGGACGCTCGACAATTTTACCATTGATACGATGAA 1504127 Query 111167 GGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGAT 111220 | || || | || |||| |||||| | | ||||||||||||||| Sbjct 1504126 GATAGGAACGTTCCAATGTTTTGAATCCAAAGAAATCGTAATCGAAATCACGAT 1504073 Score = 100 bits (110), Expect = 3e-16 Identities = 166/238 (70%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 |||| || || ||||| |||||||||||||| ||||| ||| || | ||||||| Sbjct 1752807 TACCAACTGCATCAATTTCATCGATGAATACAATACATGGTGCATTCTTTCTAGCCTGTT 1752866 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 | || || || | ||||| | |||||||| || |||||||| ||||| | || Sbjct 1752867 CAAATAGATCTCTAACACGTGATGGACCAACACCAACAAACATCTCTACGAAATCTG--- 1752923 Query 11795 CAGAACACT----GAAT-GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849 | |||| |||| ||| || ||||| | ||||||||| | ||| ||| | | Sbjct 1752924 --AACCACTTGTAGAATAGAATGGTACATTTGCTTCACCAGCGGTTGCTTTAGCAATCAA 1752981 Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 ||| ||||| ||||| |||| |||| | | || || || | || ||||| |||||| Sbjct 1752982 AGTTTTACCAGTACCTGGTGGACCAACTAAAATAGCACCTCTTGGTATCTTTGCACCA 1753039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975698149800