Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 224 1e-53 seq3 91.5 2e-13 >seq4 Length=5450249 Score = 224 bits (248), Expect = 1e-53 Identities = 1122/1764 (64%), Gaps = 56/1764 (3%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 || ||||||||||| || ||||| | |||| ||||| | ||| | |||||| || | | Sbjct 1505909 CGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCATGAGTAGAAATGCATTGAGGTG 1505850 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 || || | | ||||| | ||||||| ||| | ||||||||| || || ||||| Sbjct 1505849 AGTTTAGCAAAGGTTGGTTCAGCAATGAAAACATTGAAACTTTGACTTTGATCGATGAAA 1505790 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTGATTTCCCACACTGTGCG 105768 |||||| | || |||||||| |||| | | ||| | ||||||||| ||||| Sbjct 1505789 GCACCACGATCAGCAGCCATATCGATGAGAGTTCTTTGACG-GATTTCCCAAACTGTTTT 1505731 Query 105769 GTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTT 105828 ||||| | || | |||||| ||||| | ||| |||||| ||||| | || Sbjct 1505730 ATAGAGTTCTTTCAAATCATCAGGGATGCCACCGATGGATTGAATGGAACCACGTGCAGC 1505671 Query 105829 GACCATGAGATCCTTCATATCCTTGGACCAAA-GACCAATCTTCTTGAGATCATTGACGA 105887 || || ||| |||||| || ||||||| | ||||| | | ||||||| | || | Sbjct 1505670 AACGATTTGATTCTTCATCTCTGGTGACCAAATGCCCAAT-TCCATGAGATCTTCGAGTA 1505612 Query 105888 GATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCG 105947 || ||||||||||| || || || || | | | || ||||| | | Sbjct 1505611 ATTGTTTGTTGACAATTGTGAATTCACCTGCTAAAACACGACGACTGTAAATGTTGGAAG 1505552 Query 105948 TGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTG 106007 |||| ||||||||||||||||| ||||| | |||||| || || || |||||||||| Sbjct 1505551 TGTAAGGTTCAAAGCATTCATTGTTACCAAGGATTTGACTTGTTGAAGCGGTTGGCATTG 1505492 Query 106008 GTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGA---TGCGTTCCTTGAGAACAT 106064 |||| || | || ||||| | ||| | |||| || ||||| || | Sbjct 1505491 GTGCAATGAGGAGTGAATTACGTAAACCACCCTTATTGACAATGTTATCCTTTAGCTCTG 1505432 Query 106065 CCCAGT-CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGG 106123 |||| | | | || |||||| | || |||| ||||||||||||| || | |||| | Sbjct 1505431 CCCAATTCCAACGAGAACTTGGTGTAACATTCC-ACATATCAAATTGGAGGATACCTTTG 1505373 Query 106124 GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGG-GCTTCAGCCAATTCACAGCT 106182 || | || ||||| | || | ||||||| ||| | | || ||||||||| Sbjct 1505372 GAAGCTGGTGAACCTTTGAAAGATTCATAGGTACCATCACGGATC-GCCAATTCATGAGA 1505314 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242 || || | || || |||||||| ||| | |||| | | ||| | Sbjct 1505313 GGCAGTCAAAGCGGCAAAGTAAATGGTTTCGGCGATTTCAACATTTAATTTAGCGGCGGC 1505254 Query 106243 ATCTGAATC-AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCA 106301 | | ||| ||| || || || ||| || ||||| || | |||||||| ||| | Sbjct 1505253 AACACTATCGAAAGGCATA-CGCATTTTAATGAAAACATCGGCCAAACCTTGAATACCAA 1505195 Query 106302 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAAT 106358 |||||| || | |||| | ||| || || || |||| || |||||| | | Sbjct 1505194 TACCAATTGGACGATGTCTAAGATTTGAAGTTTTAGC---CTCAGCCACTGGATAATAGT 1505138 Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418 | | || |||| ||| ||||| ||| | | ||||||||||||| || || Sbjct 1505137 TACGATCGATGATAACGTTAAGATTGACGGTTATTAACTTTGTGATTTCAAATAGGAATT 1505078 Query 106419 CATAATCAAAAG----------TGC-------GAGTCTCTTCATTGAC----ATACTTTG 106457 || ||||| || ||| || | ||||| | |||||| Sbjct 1505077 GATGGTCAAACTCTTTTTCTTTTGGATCGGTTGAGCCTACTTTTTGACGAACAAACTTTG 1505018 Query 106458 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 106517 |||| || || || || | ||| ||||| || | ||||| |||||| | | | Sbjct 1505017 GAAGTGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATGTGTATTGAATGA 1504958 Query 106518 TTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGT 106577 | || ||||| | || ||| |||| || || ||||||||||| || || | Sbjct 1504957 TCTCGGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTAGCAT 1504898 Query 106578 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTG 106637 | || ||||||||||| | ||| | || || || || || || |||| | ||| | Sbjct 1504897 TACAGGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAGACTCCATAATGG 1504838 Query 106638 CCTTCCACACATCGGCGGCTGGTACAATGGCG----TTGGCCCGTCCCTCC--GCCTCGT 106691 | ||| | || ||| |||| | |||| ||| || |||| Sbjct 1504837 CGAACCAAAGTTCTTGAGCTTT---AATGACACGTCTTGGGAGGTCAGGTGTTGCTTCGT 1504781 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 106751 | || ||||| || | ||||| | || | ||||||||||| | | Sbjct 1504780 ATTTCAAATAGAGAGCACGATGTTCCTCTGAGTGAGTTTCAGCAAGACCTGGTGCTTCAT 1504721 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 |||||| || || | ||| | ||| | || || || | ||| |||| || || Sbjct 1504720 TTGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTTCCATAAAAATATCACTAA 1504661 Query 106812 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 106871 ||| || | | || ||||||||| | |||||| | ||| ||| || Sbjct 1504660 CCCAAAGAGCATAGAATAGATCTCTAGCTCTCATCTCTTCCTTACCAGTGTTTTTCTTTA 1504601 Query 106872 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 106931 |||| || || | || ||| ||||||||||| || | || || || | | |||| Sbjct 1504600 GATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACGGCAAAGGCACCCT 1504541 Query 106932 TTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 106988 ||| ||| || |||||| || || || || || | || || || |||||||||| Sbjct 1504540 TTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATTG 1504481 Query 106989 GAATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 107047 | | | ||||| || ||| |||||| || || |||||| | || | || | | Sbjct 1504480 GCACCAAACCAT-TGCTTGTACCATTGGTACCACGAATATAACTTTGAGCAGCACGAATC 1504422 Query 107048 TCATGGATGTGC-ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 107106 | || || ||| || |||||||| || || | |||||| || | ||||| | | | Sbjct 1504421 TTAT-GAACTGCAATACCAATACCACCGGCACTCTTTGAAATGAGTGCACATTGTTTCAA 1504363 Query 107107 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 107166 ||| |||| ||||| | |||||| |||||||| | | | ||| ||| ||||| Sbjct 1504362 AGTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACAAGATGACAT 1504303 Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 || ||| ||||||||| || ||||| || |||||||| || ||| |||||| | Sbjct 1504302 TTGTGGTGATGGTGTACCTGCGTTGAATAGAGTTGGTGTGGCATGAGTGAACAATTTCTC 1504243 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||| | ||| || | | | |||| || | |||||| || ||||| || |||| Sbjct 1504242 AGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCCATGGATACCAATGGA 1504183 Query 107287 CACACGCATAAACATGTATTGGGG 107310 |||||||| ||||||| ||| || Sbjct 1504182 GACACGCATCAACATGTGTTGTGG 1504159 Score = 118 bits (130), Expect = 1e-21 Identities = 310/465 (67%), Gaps = 15/465 (3%) Strand=Plus/Plus Query 9230 GATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTA--TCAAAACCA 9287 ||||||| | ||| || || |||| ||||||| | | |||| | | ||||||| Sbjct 1752670 GATATCAGGTCTATTGGTTGCAGCGAGTACAACAACA--TTCTTCAATGGTTTAAAACCA 1752727 Query 9288 TCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG---CTGGCATA 9344 ||||| || ||| | ||| || | || | || ||||||||||||| | | | | Sbjct 1752728 TCCATTTCAACCAACAATTGATTTAATGTATTCTCACGTTCATCATTCGAACCAGAGAAA 1752787 Query 9345 CCACCAGCACTGCGTTGCTTTCCCA-CGGCATCAATCTCATCAATGAAGACAATACATGG 9403 ||||| || | ||||| | ||| | |||||||| ||||| ||||| ||||||||||| Sbjct 1752788 CCACCTTTACCTC-TTGCTCTACCAACTGCATCAATTTCATCGATGAATACAATACATGG 1752846 Query 9404 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463 | ||| | | || |||||| ||||| | ||| | | | || ||||||||||| Sbjct 1752847 TGCATTCTTTCTAGCCTGTTCAAATAGATCTCTAACACGTGATGGACCAACACCAACAAA 1752906 Query 9464 CATCTCCACAAAGTTTGCGGCGGAACAT-TGGA--TGAAGGGGACATTAGATTCACCCGC 9520 |||||| || || | || | || | | || ||| || ||||| | |||||| || Sbjct 1752907 CATCTCTACGAAATCTGAACC---ACTTGTAGAATAGAATGGTACATTTGCTTCACCAGC 1752963 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 | ||| || | | ||| ||||| |||||||| ||| | | | ||||| | Sbjct 1752964 GGTTGCTTTAGCAATCAAAGTTTTACCAGTACCTGGTGGACCAACTAAAATAGCACCTCT 1753023 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 ||| ||||| || ||| | || | || ||| || | ||| | ||| | |||| || Sbjct 1753024 TGGTATCTTTGCACCAATGTCATGGAATTTCTTTGGATTCTTTAAAAAGTTTACAAATTC 1753083 Query 9641 TTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 9685 ||| | ||| |||| || | ||| || | |||||| |||| Sbjct 1753084 TTCAATCTCAACTTTAGCTTCACCAAGACCTGCTACATCGCTAAA 1753128 Score = 114 bits (126), Expect = 2e-20 Identities = 267/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 6906 TATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGGAG 6965 |||||||| || |||| || | | |||||| ||| | ||| |||||| ||| Sbjct 2062605 TATCAAGCTTCAACCTCTGAATTATATGGTAAAGTTCAAGAGATTCCACAATCAGAGACC 2062546 Query 6966 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTC 7025 ||||| ||||| ||||| || |||| ||| ||||| || ||||| |||| Sbjct 2062545 ACACCATTCTATCCACGTTCACCATACGCTGTCGCAAAGCAATATGCCTATTGGATCGTT 2062486 Query 7026 AAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAA 7085 ||| || || ||| |||||| ||| ||| || || ||| | ||||| |||||| Sbjct 2062485 GTAAACTATCGTGAGGCTTACGATATGTATGCATGTAATGGTATCTTATTCAATCATGAA 2062426 Query 7086 TCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CGAGG-GTATCAAACAAA 7143 ||||| | ||||| || ||||| || | ||||| || || || | | Sbjct 2062425 TCACCACGTAGAGGTCCAACTTTTGTAACTAGAAAGATCACTCGTTTCGTTGCTGGTATT 2062366 Query 7144 TCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGG 7203 |||| || || | | | ||| | | |||||||| || ||||| | | ||||||| Sbjct 2062365 GCATGT-GGTAGAGATGAAATTCTCT-ACTTGGGTAATATCAACGCTAAACGTGATTGGG 2062308 Query 7204 GTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCC-GAC 7262 ||||||| | || || |||||||| |||||| | ||| | |||||||| |||||| || Sbjct 2062307 GTCACGCTAGAGATTACGTTGAAGCAATGTGGTTAATGTTACAACAAGA-GAAGCCAGAA 2062249 Query 7263 GAATATGTAGTAGCAACGGGTGAGACCCATTCAGT 7297 || | || | || || ||||| || |||||||| Sbjct 2062248 GATTTCGTTATTGCCACTGGTGAAACTCATTCAGT 2062214 >seq3 Length=6357299 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 25609 CCAACAAATCCATATTCAGCATCAAAAGCGGCGGCCGAAATGATAGTCCGTTCATAT-AT 25667 ||||| ||||||||||||||| ||||| | || ||| |||| | |||||| || Sbjct 2091362 CCAACTAATCCATATTCAGCAAGTAAAGCAGGTGCAGAACATTTAGTTCAATCATATTAT 2091303 Query 25668 AGAATCATTTGATATGAATATCAAAATAATTCGCTGTAATAATGTTTATGGTCCAAATCA 25727 | |||||||| | | | | | ||||| | | ||||||| ||||||||||||| || Sbjct 2091302 A-AATCATTTAAATTACCTGTTATAATAACTAGAGCTAATAATATTTATGGTCCAAAGCA 2091244 Query 25728 ATACCCGGAGAAACTCATTCCAAAGTTTATAA 25759 ||| || || ||| | |||||||| ||||||| Sbjct 2091243 ATATCCTGAAAAAATTATTCCAAAATTTATAA 2091212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980497634840