Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq5 206 3e-48 >seq5 Length=5125352 Score = 206 bits (228), Expect = 3e-48 Identities = 454/670 (68%), Gaps = 28/670 (4%) Strand=Plus/Minus Query 154443 ATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTAATGCCTGTG 154502 ||| ||||| | || ||||| ||||||||||||||||| | | ||| | || || Sbjct 45416 ATGATTCCATTGGGTAGTTGTACAATGAAATTAAATGCTACCACTGAAATGTATCCAGTT 45357 Query 154503 TCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACCATGGGTTAT 154562 |||||| ||| ||| | | |||||| | ||| | || | | |||||| Sbjct 45356 TCATGGCCAGAATTTAATTCAATTCATCCATTTGTACCAGCTAATCAATCACTTGGTTAT 45297 Query 154563 CAGAAAATTATAGA-TGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTAT 154621 || |||| | || | | | || | ||| |||||||| |||| || || ||| | Sbjct 45296 AAGGAAATGTTTGAATCAATCTCAAATATG-TTATGTGAAGTCACTGGTTTCGATGGTTG 45238 Query 154622 ATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGC 154681 || |||||||| || || || ||||| ||||| ||||| || | | | ||| | | Sbjct 45237 TTCTTTACAACCAAATGCTGGTTCACAAGGTGAATATGCTGGTTTAATGGTAATTCGTTC 45178 Query 154682 ATAC----CATCAAG-GATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCA 154736 || | |||| | ||| || | |||||||||| ||| | || |||| || Sbjct 45177 TTATTTAACTTCAATTGGTCAA-AG----TCAAAGAAATGTTTGTCTCATTCCAGTCTCT 45123 Query 154737 GCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAG 154796 || ||||| |||||||| || ||||||| |||| || ||||||||||| | ||| | Sbjct 45122 GCTCATGGTACTAATCCAGCAAGTGCTGCAATGGTTGGTATGAAAGTTGTTGTTGTAGAT 45063 Query 154797 TGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGC----AATCATGAA 154852 |||||| ||||||| || || | ||||| | ||||| || ||| || Sbjct 45062 TGTGATACCAATGGTAATATCGATGTTGCCGATCTTAAAGCTAAAGCTGAAAAACATAAA 45003 Query 154853 --TACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAA 154910 |||||| | ||| | ||||||| || || ||||| || ||||||||||||||| Sbjct 45002 GATACATTGG--CTGC----TCTTATGATCACTTATCCATCCACTCATGGTGTATTTGAA 44949 Query 154911 ACTAACATTAGACAGATAT--GTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTG 154968 | | | ||||| || | ||| |||||| |||||||||||| || ||| | | Sbjct 44948 G--AGGGTGCCAATGATATTTGTGATATCATTCATGCCAATGGTGGTCAAGTCTATATGG 44891 Query 154969 ATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATG 155028 |||| |||||| | || || || || || || ||| |||| |||||| |||| Sbjct 44890 ATGGTGCAAATATGAACGCTCAAGTTGGTCTTTGTCGTCCAGGTGATATTGGTGCCGATG 44831 Query 155029 TATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCG 155088 | |||||| |||| | |||||||| || |||||||||||||| ||||| ||||| || Sbjct 44830 TTTGTCATTTAAATCTTCATAAAACTTTTTGTATTCCACATGGTGGTGGTGGTCCAGGTA 44771 Query 155089 TAGGTCCTAT 155098 | ||||| || Sbjct 44770 TGGGTCCAAT 44761 Score = 152 bits (168), Expect = 6e-32 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 153216 GGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGT 153275 || || |||||||| |||||||| | || || || || ||| || | |||||||| || Sbjct 46682 GGTTATTATGGAACAATTACACCACATGTAATTCAACGTAACATTTTAGAGAATCCAGGT 46623 Query 153276 TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTA 153335 ||||| ||| | ||||| || |||||||| ||||| ||| || | ||||| |||| Sbjct 46622 TGGTATACACCATACACACCATATCAAGCAGAGATTAGTCAAGGTCGTTTGGAGAGTTTA 46563 Query 153336 TTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTA 153395 || |||| |||||| | | |||| ||||||| |||||||| |||| ||||| || Sbjct 46562 TTGAATTTCCAAACTATGGTATCAGAGTTTACAGGTTTACCAATGTCAAATGCATCATTA 46503 Query 153396 TTAGATGAAGCAACTGCAGCAGCAGAAGCAATGC 153429 || ||||||||||| || || ||||| ||||||| Sbjct 46502 TTGGATGAAGCAACCGCTGCTGCAGAGGCAATGC 46469 Score = 145 bits (160), Expect = 9e-30 Identities = 217/306 (71%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 153713 GGTATTGATGCAACCTGTAGGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAG 153772 || ||| || |||| |||||| |||||| ||||||||| | |||| || ||||| Sbjct 46188 GGCATTATTGAAACCACCAGGTGAATGGGGAGCTGATATTGCCTTGGGTAATAGTCAAAG 46129 Query 153773 GTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAA 153832 |||||| | || | || | ||| ||||| |||||||| |||||| |||| | ||| || Sbjct 46128 ATTTGGTGTACCATTAGGTTTTGGTGGTCCACATGCTGCTTTCTTTTCAACTAAAGATAA 46069 Query 153833 GTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTA--GATAGTGAAGGTAAT 153890 |||| | | || || ||||| | ||| || |||| |||| |||||||| Sbjct 46068 GTATGCTCGTTTACTTCCAGGTAGAATCATTGGT--GTAAGTAAAGATAAACAAGGTAAT 46011 Query 153891 AAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACC 153950 ||||| | | | ||| |||| ||| | || || ||||| | | || |||||||| Sbjct 46010 TCAGCATTCCGTATGGCATTACAAACTCGTGAACAACATATTCGTCGTGAAAAAGCAACA 45951 Query 153951 AGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATAT 154010 ||||| || || |||| ||||| ||||||||||||||| | | ||||||| ||| Sbjct 45950 TCAAACATTTGTACCTCTCAAGCACTCTTGGCTAATATGTCTGCAATGTATGCAGTTTAT 45891 Query 154011 CATGGT 154016 |||||| Sbjct 45890 CATGGT 45885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212503153440