Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq5 188 8e-43 >seq5 Length=5125352 Score = 188 bits (208), Expect = 8e-43 Identities = 464/695 (67%), Gaps = 24/695 (3%) Strand=Plus/Minus Query 159118 ATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTGATGCCTGTG 159177 ||| ||||| | ||||||||||| |||||| |||| || | | ||| || || || Sbjct 45416 ATGATTCCATTGGGTAGTTGTACAATGAAATTAAATGCTACCACTGAAATGTATCCAGTT 45357 Query 159178 TCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACCATGGGTTAT 159237 |||||| ||| ||| | | |||||| | ||| | || | | |||||| Sbjct 45356 TCATGGCCAGAATTTAATTCAATTCATCCATTTGTACCAGCTAATCAATCACTTGGTTAT 45297 Query 159238 CAAAAAATTATAGA-TGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTAT 159296 | |||| | || | | | || | ||| |||||||| |||| || || ||| | Sbjct 45296 AAGGAAATGTTTGAATCAATCTCAAATATG-TTATGTGAAGTCACTGGTTTCGATGGTTG 45238 Query 159297 ATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGC 159356 || |||||||| || || || ||||| ||||| ||||| || | | | ||| | | Sbjct 45237 TTCTTTACAACCAAATGCTGGTTCACAAGGTGAATATGCTGGTTTAATGGTAATTCGTTC 45178 Query 159357 ATAC----CATCAAG-GATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCA 159411 || | |||| | ||| || | |||||||||| ||| | || |||| || Sbjct 45177 TTATTTAACTTCAATTGGTCAA-AG----TCAAAGAAATGTTTGTCTCATTCCAGTCTCT 45123 Query 159412 GCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAG 159471 || ||||| |||||||| ||| || | |||| || ||||||||||| | ||| | Sbjct 45122 GCTCATGGTACTAATCCAGCAAGTGCTGCAATGGTTGGTATGAAAGTTGTTGTTGTAGAT 45063 Query 159472 TGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGC----AATCATGAA 159527 |||||| |||| || || || | ||||| | ||||| || ||| || Sbjct 45062 TGTGATACCAATGGTAATATCGATGTTGCCGATCTTAAAGCTAAAGCTGAAAAACATAAA 45003 Query 159528 --TACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAA 159585 |||||| | ||| | ||||||| || |||||||| || ||||||||||||||| Sbjct 45002 GATACATTGG--CTGC----TCTTATGATCACTTATCCATCCACTCATGGTGTATTTGAA 44949 Query 159586 ACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGAT 159645 || | || ||| | || |||||| ||||||||||| || ||| | ||| Sbjct 44948 GAGGGTGCCAATGATATTTGTGATATCATTCATGCCAATGGTGGTCAAGTCTATATGGAT 44889 Query 159646 GGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTA 159705 ||||||||| | || || || || ||||| ||| |||| |||||| ||||| Sbjct 44888 GGTGCAAATATGAACGCTCAAGTTGGTCTTTGTCGTCCAGGTGATATTGGTGCCGATGTT 44829 Query 159706 TGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTA 159765 |||||| |||| | ||||| || || |||||||||||||| ||||| ||||| || | Sbjct 44828 TGTCATTTAAATCTTCATAAAACTTTTTGTATTCCACATGGTGGTGGTGGTCCAGGTATG 44769 Query 159766 GGTCCTATTGGTGTAGCAAAACATCTCACACCATT 159800 ||||| ||| | || | |||||| | ||||| Sbjct 44768 GGTCCAATTTGCGTTAAATCCCATCTCGCTCCATT 44734 Score = 134 bits (148), Expect = 2e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 157891 GGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGT 157950 || || |||||||| || ||||| | || || || || ||| || | |||||||| || Sbjct 46682 GGTTATTATGGAACAATTACACCACATGTAATTCAACGTAACATTTTAGAGAATCCAGGT 46623 Query 157951 TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTA 158010 ||||| ||| | ||||| || |||||||| ||||| ||| || | ||||| |||| Sbjct 46622 TGGTATACACCATACACACCATATCAAGCAGAGATTAGTCAAGGTCGTTTGGAGAGTTTA 46563 Query 158011 TTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTA 158070 || |||| |||||| | | |||| | ||||| |||| || |||| ||||| || Sbjct 46562 TTGAATTTCCAAACTATGGTATCAGAGTTTACAGGTTTACCAATGTCAAATGCATCATTA 46503 Query 158071 TTAGATGAAGCAACTGCAGCAGCAGAAGCAATGC 158104 || ||||||||||| || || ||||| ||||||| Sbjct 46502 TTGGATGAAGCAACCGCTGCTGCAGAGGCAATGC 46469 Score = 132 bits (146), Expect = 6e-26 Identities = 214/306 (70%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 158388 GGTATTGATGCAACCTGTAGGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAG 158447 || ||| || |||| |||||| |||||| ||| ||||| | |||| || ||||| Sbjct 46188 GGCATTATTGAAACCACCAGGTGAATGGGGAGCTGATATTGCCTTGGGTAATAGTCAAAG 46129 Query 158448 GTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAA 158507 |||||| | || | || | || ||||| |||||||| |||||| |||| | ||| || Sbjct 46128 ATTTGGTGTACCATTAGGTTTTGGTGGTCCACATGCTGCTTTCTTTTCAACTAAAGATAA 46069 Query 158508 GTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTA--GATAGCGAAGGTAAT 158565 |||| | | || || ||||| | ||| || |||| |||| |||||||| Sbjct 46068 GTATGCTCGTTTACTTCCAGGTAGAATCATTGGT--GTAAGTAAAGATAAACAAGGTAAT 46011 Query 158566 AAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACC 158625 ||||| | | | ||| |||| ||| | || || ||||| | | || |||||||| Sbjct 46010 TCAGCATTCCGTATGGCATTACAAACTCGTGAACAACATATTCGTCGTGAAAAAGCAACA 45951 Query 158626 AGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATAT 158685 ||||| || || | |||||||| ||||||||||||||| | ||||||| ||| Sbjct 45950 TCAAACATTTGTACCTCTCAAGCACTCTTGGCTAATATGTCTGCAATGTATGCAGTTTAT 45891 Query 158686 CATGGT 158691 |||||| Sbjct 45890 CATGGT 45885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588050898623760