Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 214 2e-50 seq2 161 1e-34 seq5 105 8e-18 seq6 98.7 1e-15 >seq4 Length=5450249 Score = 214 bits (236), Expect = 2e-50 Identities = 617/939 (66%), Gaps = 15/939 (2%) Strand=Plus/Minus Query 47864 AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 ||||||| | |||||||||||| || |||||||| || || | |||| ||| || Sbjct 1505028 AACAAACTTTGGAAGTGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATGT 1504969 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 ||||| || || || | ||| ||||||| || | || ||||| ||||| | ||||| Sbjct 1504968 GTATTGAATGATCTCGGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATT 1504909 Query 47984 --ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGA 48041 ||| | |||| || |||||||| | || || || || |||||||| | ||| Sbjct 1504908 GGATTTAGCAT--TACAGGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGA 1504851 Query 48042 GATTCAATGATAGATTTCCAAACAGTCCT--AGCCTTTATAACAGCTCTAGCTTTATTA- 48098 || || || || | ||||| || || ||| || || ||| ||| | | | Sbjct 1504850 GACTCCATAATGGCGAACCAAA--GTTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAG 1504793 Query 48099 -TCATG-TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACC 48156 | || ||||||||| ||| | | ||| || | | | | | | Sbjct 1504792 GTGTTGCTTCGTATTTCAAATAGAGAGCACGATGTTCCTCTGAGTGAGTTTCAGCAAGAC 1504733 Query 48157 CAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAA 48216 | || |||||| ||||| | | | |||||| ||| | || || | ||||| Sbjct 1504732 CTGGTGCTTCATTTGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTTCCATAA 1504673 Query 48217 ATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 | ||||| | ||||||||| ||| |||| ||| |||| ||| | ||||| || ||| Sbjct 1504672 AAATATCACTAACCCAAAGAGC-ATAGAATAGATCTCTAGCTCTCATCTCTTCCTTACCA 1504614 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 | || | || || |||| ||| || | | |||||| ||||||||||| || || | Sbjct 1504613 GTGTTTTTCTTTAGATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACG 1504554 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | |||| || || ||| |||||||| | || | ||||||| || || Sbjct 1504553 GCAAAGGCACCCTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAA 1504494 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || | | |||||| || | |||||| | |||||||||| || |||||||||| | Sbjct 1504493 ACACGAAGCATTGGCACCAAACCATTGCTTGTACCATTGGTACCACGAATATAACTTTGA 1504434 Query 48456 CTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCA 48515 ||| | || ||| || || |||||| |||||||| || | || || || || ||| Sbjct 1504433 GCAGCACGAATCTTATGAACTGCAATACCAATACCACCGGCACTCTTTGAAATGAGTGCA 1504374 Query 48516 CACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAA 48575 || |||| | || |||||||| || || || ||| || |||| | | | ||| Sbjct 1504373 CATTGTTTCAAAGTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAA 1504314 Query 48576 CAACTAGACATTTGCGGATGACAA-GTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 ||| |||||||| || ||| || |||| || |||| ||||| | |||||| | Sbjct 1504313 CAAGATGACATTTGTGG-TGATGGTGTACCTGCGTTGAATAGAGTTGGTGTGGCATGAGT 1504255 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATG 48694 ||| ||||||| || || ||| || || | || |||| || | || ||| Sbjct 1504254 GAACAATTTCTCAGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCCATG 1504195 Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT 48754 ||||| || || |||||||| ||||| | ||| || | || |||||||| ||| || Sbjct 1504194 GATACCAATGGAGACACGCATCAACATGTGTTGTGGACGCTCGACAATTTTACCATTGAT 1504135 Query 48755 TTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAA 48793 |||||| || |||||||||||| || ||||| Sbjct 1504134 ACGATGAAGATAGGAACGTTCCAATGTTTTGAATCCAAA 1504096 Score = 109 bits (120), Expect = 6e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 || || | ||| ||||||||||||||||||||| ||||| ||||||||||| Sbjct 1505912 GTACGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCATGAGTAGAAATGCATTGAG 1505853 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 || | ||||| | | | ||||| | ||| || ||| | | |||||| ||||| || Sbjct 1505852 GTGAGTTTAGCAAAGGTTGGTTCAGCAATGAAAACATTGAAACTTTGACTTTGATCGATG 1505793 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTT 47192 || ||||| | |||||| |||||||| | | | ||||| | || ||||| |||||| Sbjct 1505792 AAAGCACCACGATCAGCAGCCATATCGATGAGAGTTCTTTGACGGATTTCCCAAACTGTT 1505733 Query 47193 TTATAAATTTGTTTAATGTCTTCTGGGA 47220 ||||| | || ||| | || || |||| Sbjct 1505732 TTATAGAGTTCTTTCAAATCATCAGGGA 1505705 Score = 89.7 bits (98), Expect = 6e-13 Identities = 166/238 (70%), Gaps = 13/238 (5%) Strand=Plus/Minus Query 48933 GTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGA 48992 |||| |||||||||||| |||| | || | || || || ||| |||||||||||||| Sbjct 1503929 GTTTGTTTATGAAGATTCGATACACTAATACGTGCTGCCAAAATACCATAATCTGGATGA 1503870 Query 48993 ATTGTTGTACATGTA--CTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTA 49050 ||||| |||| || || | | | || ||||| || |||| |||||| |||| ||| Sbjct 1503869 CGTGTTG-ACATATATGCT-GCTGTCTCGGCTGCCAAATTATCCAATTCTGTAGTCTTTA 1503812 Query 49051 CACCTGTATATATTCCTTGAATAACTTTCATTGCTATATTTACTGGATC-----TATATG 49105 |||||| | ||| ||| || ||||| ||||| | | |||||| ||| || Sbjct 1503811 CACCTGGAAATACTCCACTAACTACTTTTTGTGCTACTTCAATTGGATCAACTATATCTG 1503752 Query 49106 A--TCCATATCCAGTCCATA--ACATAAtttttttATTCTAGATGTAATTTTATCAAA 49159 | | || | ||||| |||||| | ||||| ||||||||||||||||| Sbjct 1503751 AATTTAATTTTGGTTCCATTTCACATAAAAATGAAATTCTTGATGTAATTTTATCAAA 1503694 >seq2 Length=8484197 Score = 161 bits (178), Expect = 1e-34 Identities = 183/245 (75%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 |||||| ||||||||||||| || ||||| | || |||||||| ||||||||||| Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||| |||| | ||||| ||||| ||||| ||||| ||| ||| |||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 |||||| || ||||||||||| ||||| | | |||| || | | ||| || || Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAA---TGAATCTGAATCATT 2356668 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| | | |||||| || ||||||||||| | |||||| ||||| || || | ||| Sbjct 2356667 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 2356608 Query 19200 AAATA 19204 ||||| Sbjct 2356607 AAATA 2356603 Score = 161 bits (178), Expect = 1e-34 Identities = 183/245 (75%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 |||||| ||||||||||||| || ||||| | || |||||||| ||||||||||| Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||| |||| | ||||| ||||| ||||| ||||| ||| ||| |||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 |||||| || ||||||||||| ||||| | | |||| || | | ||| || || Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAA---TGAATCTGAATCATT 3675118 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| | | |||||| || ||||||||||| | |||||| ||||| || || | ||| Sbjct 3675119 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 3675178 Query 19200 AAATA 19204 ||||| Sbjct 3675179 AAATA 3675183 Score = 109 bits (120), Expect = 6e-19 Identities = 145/198 (73%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| ||||| |||||||| || || || ||||| || || |||||||||||||||| | Sbjct 2356421 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 2356362 Query 19319 TCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCT 19377 | ||||||||| ||| |||||| | | |||||||| || || |||||| || Sbjct 2356361 TTTGTACTTCA-GACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCA 2356303 Query 19378 GCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA---TTC 19434 ||||||||||| || |||||| || ||||| ||||| |||||| || | | Sbjct 2356302 GCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATTTATATTCC 2356243 Query 19435 CAATCATTAATATCTTTA 19452 |||||| | |||| ||| Sbjct 2356242 CAATCAACATTATCATTA 2356225 Score = 109 bits (120), Expect = 6e-19 Identities = 145/198 (73%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| ||||| |||||||| || || || ||||| || || |||||||||||||||| | Sbjct 3675365 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 3675424 Query 19319 TCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCT 19377 | ||||||||| ||| |||||| | | |||||||| || || |||||| || Sbjct 3675425 TTTGTACTTCA-GACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCA 3675483 Query 19378 GCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA---TTC 19434 ||||||||||| || |||||| || ||||| ||||| |||||| || | | Sbjct 3675484 GCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATTTATATTCC 3675543 Query 19435 CAATCATTAATATCTTTA 19452 |||||| | |||| ||| Sbjct 3675544 CAATCAACATTATCATTA 3675561 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 |||||||||||||| |||| ||||| | |||| ||| ||||||| |||||||||| | Sbjct 2356026 GCTTTTTTATACATTCTCCAGATATCTGGGTATTTTATTGGAAATAATACAAATCTATCT 2355967 Query 19552 TTATTTTCTTTAAGAATAGGTTCCAT 19577 ||||||||||| ||||| ||||| || Sbjct 2355966 TTATTTTCTTTGAGAATTGGTTCAAT 2355941 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 |||||||||||||| |||| ||||| | |||| ||| ||||||| |||||||||| | Sbjct 3675760 GCTTTTTTATACATTCTCCAGATATCTGGGTATTTTATTGGAAATAATACAAATCTATCT 3675819 Query 19552 TTATTTTCTTTAAGAATAGGTTCCAT 19577 ||||||||||| ||||| ||||| || Sbjct 3675820 TTATTTTCTTTGAGAATTGGTTCAAT 3675845 >seq5 Length=5125352 Score = 105 bits (116), Expect = 8e-18 Identities = 196/283 (69%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 65854 GTAATAGGAATAGATGAAGGCCAATTCTTTCAAGATATTGTAGAGTTTTGTGAAAATATG 65913 ||||| || || |||||||||||||| || | ||| ||||| | ||| ||||| | || Sbjct 2508691 GTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGACTTG 2508632 Query 65914 GCAAATAAAGGAAAAATAGTGATAGTTGCAGCATTGGATGGAACATTTAAAAGAAAACCT 65973 |||||| |||| |||| || ||| |||| ||| | ||||| || || |||||||||| Sbjct 2508631 GCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGAAAACCA 2508572 Query 65974 TTTGGTAAT--GTATTAAATTTAATTCCATTATCTGAAACAGTAACAAAACTTACAGCTG 66031 || ||| || | ||||| | || ||||| | ||||| | || || | Sbjct 2508571 TT--CCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTTAACTGCCG 2508514 Query 66032 TGTGTATGAAATGTTTTAAAGATGCATCTTTTTCAAAACGTATAGGTACAGAAACAGA-G 66090 | |||||| || | || || || | |||||||||||||| | |||| || | Sbjct 2508513 TTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCG---TCGAAAGTGATG 2508457 Query 66091 ATA--GAAATTATAGGCGGTAAAGATAAATATCTATCTGTATG 66131 ||| ||| | || || |||| |||||||||| | || || || Sbjct 2508456 ATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTG 2508414 >seq6 Length=3602379 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/213 (71%), Gaps = 17/213 (8%) Strand=Plus/Minus Query 18997 ATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCA---GAAT 19053 ||||||||||| |||||||||||||| |||||| ||| ||||||||| | || | Sbjct 705937 ATCAATTCATTTGAAAATGTTAAACCTTGCATCAAAGATCTCTTTTTTAACAAACTGATT 705878 Query 19054 ATA-GAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCT 19112 ||| ||| || | |||| || ||||||| ||| | |||| | | || ||||| | Sbjct 705877 ATACGAA--AACT--TCCACTGAAAAATATACTTTCAAATGCTACGAGTGCTACTAGACG 705822 Query 19113 TTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172 || | || | | ||||| |||||||| | ||||| || ||||||||||| Sbjct 705821 TTTTTCAAAT---GATTCATTT------ATCCATTTTAAAGCCCATTCTGCCTTCTTTTT 705771 Query 19173 TACACATGGCATTGTCTCTATAGAATTAAATAG 19205 |||||||| ||||| || || | |||||| || Sbjct 705770 AACACATGGGATTGTTTCAATTGCATTAAAAAG 705738 Score = 87.8 bits (96), Expect = 2e-12 Identities = 209/310 (67%), Gaps = 12/310 (4%) Strand=Plus/Minus Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| ||||| | || || ||| || ||| | || |||||| | ||||||| | Sbjct 705598 TTTCGGAATGTAAATATTTAATATGAATTTGATAATTATAGAAACATTTCGCTTCTGGAA 705539 Query 19319 TCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCT 19377 | ||||||| | ||| |||||| | | |||| ||| | || ||| | || Sbjct 705538 TTTGTACTTTAG-ACATAAATCTATTAAGG---TTTTTATTTATAATACCACAAGATGCA 705483 Query 19378 GCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTC--- 19434 ||||||||||||| |||| | | |||| |||||| |||||| | ||| Sbjct 705482 ACAAAAAATGCTAAAACATTTGAGAAGAAATCACGTTCATCATTTGTTAATTTTTTCTCC 705423 Query 19435 CAATCATTAAT--ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492 ||||| |||| ||| | | | | |||| |||||||||| ||| | || || Sbjct 705422 CAATC--TAATCCATCATCACTTGATTCTATTTCTTCAACTACCCATTGATTTGCAAGTG 705365 Query 19493 CTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTT 19552 |||||||||||| ||||| || || | |||| ||| ||||||| | |||| | |||| Sbjct 705364 TTTTTTTATACATTTTCCAGATGTCTGGGTATTTTATGGGAAATAACATAAATTTGTTTT 705305 Query 19553 TATTTTCTTT 19562 |||||||||| Sbjct 705304 TATTTTCTTT 705295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108511919240