Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 179 4e-40 seq5 100 3e-16 seq6 95.1 1e-14 >seq2 Length=8484197 Score = 179 bits (198), Expect = 4e-40 Identities = 218/295 (74%), Gaps = 3/295 (1%) Strand=Plus/Minus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 |||||| |||||||||||||||||||| || | || |||||||| ||||| ||||| Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 ||| ||||||||||||| ||||| | ||||||||||| |||| |||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 ||||| ||||||||||||||||| || | || || | | || |||| ||||| Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAAC--GTTCTGCAA-ATGAATCTGAATCATT 2356668 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 |||||| || || ||| |||||||| ||||| |||| ||||||||||||||| || Sbjct 2356667 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 2356608 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469 || | | ||| || ||||| | |||||||| ||||||| | |||| Sbjct 2356607 AAATAATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 179 bits (198), Expect = 4e-40 Identities = 218/295 (74%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 |||||| |||||||||||||||||||| || | || |||||||| ||||| ||||| Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 ||| ||||||||||||| ||||| | ||||||||||| |||| |||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 ||||| ||||||||||||||||| || | || || | | || |||| ||||| Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAAC--GTTCTGCAA-ATGAATCTGAATCATT 3675118 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 |||||| || || ||| |||||||| ||||| |||| ||||||||||||||| || Sbjct 3675119 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 3675178 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469 || | | ||| || ||||| | |||||||| ||||||| | |||| Sbjct 3675179 AAATAATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 113 bits (124), Expect = 5e-20 Identities = 162/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 37445 TATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTG 37504 |||||| | || ||| | | | ||||| ||||||| || ||||||||||| || || || Sbjct 2356448 TATATATG-ATAAAT-ATTTACCTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTG 2356391 Query 37505 AAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAA 37564 ||||||||| ||||| || ||||| | | ||| || || | ||| || | || | Sbjct 2356390 AAAACCATAGAAACATCTTGCTTCTGGAATTTGTACTTCAGACATAAATCTAGTTGCAAG 2356331 Query 37565 GTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATG 37624 ||||||||| || || |||||| || ||||| || || | ||||| | || ||||| Sbjct 2356330 GTTTTCATTTACAATACCATCAGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAATG 2356271 Query 37625 TCTTTCATCATTTGATAATTT---TTTCCAATCATTAATATCTTT 37666 | ||||| || || |||||| || ||||||| | |||| || Sbjct 2356270 ACGTTCATTATCTGTTAATTTATATTCCCAATCAACATTATCATT 2356226 Score = 113 bits (124), Expect = 5e-20 Identities = 162/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 37445 TATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTG 37504 |||||| | || ||| | | | ||||| ||||||| || ||||||||||| || || || Sbjct 3675338 TATATATG-ATAAAT-ATTTACCTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTG 3675395 Query 37505 AAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAA 37564 ||||||||| ||||| || ||||| | | ||| || || | ||| || | || | Sbjct 3675396 AAAACCATAGAAACATCTTGCTTCTGGAATTTGTACTTCAGACATAAATCTAGTTGCAAG 3675455 Query 37565 GTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATG 37624 ||||||||| || || |||||| || ||||| || || | ||||| | || ||||| Sbjct 3675456 GTTTTCATTTACAATACCATCAGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAATG 3675515 Query 37625 TCTTTCATCATTTGATAATTT---TTTCCAATCATTAATATCTTT 37666 | ||||| || || |||||| || ||||||| | |||| || Sbjct 3675516 ACGTTCATTATCTGTTAATTTATATTCCCAATCAACATTATCATT 3675560 >seq5 Length=5125352 Score = 100 bits (110), Expect = 3e-16 Identities = 198/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 78230 TGATGTTATTGGAATTGATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAA 78289 |||||| ||||| ||||||||||| |||||||| || | || ||||| |||| | Sbjct 2508695 TGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGA 2508636 Query 78290 TATGGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAA 78349 |||||||| |||| |||| ||||| || | ||| |||||| ||| | |||||||| Sbjct 2508635 CTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGAAA 2508576 Query 78350 AACATTTGGTAAT-ATTC-TAAATTTAATTCCATTATCTGAAAAGGTAATAAAATTAAAT 78407 | |||| ||| | || | ||||| | || ||||| | | | ||| |||| | Sbjct 2508575 ACCATT--CCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTTAACT 2508518 Query 78408 GCTATATGTAAAATATGTTTTAATGATGCTGCATTTACAAAAAGATTAT-GT-GACGATA 78465 || | |||| | || | ||||| || || ||| ||||| | ||| || || | Sbjct 2508517 GCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACG--TATCGTCGAAAGTG 2508460 Query 78466 CTAAAATTGAACTAATTGGTGGAGAGGATAAATATAGTTCTGTTTG 78511 | | || ||| |||||||||| |||||||||| ||| ||||| Sbjct 2508459 ATGATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTG 2508414 >seq6 Length=3602379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/211 (71%), Gaps = 13/211 (6%) Strand=Plus/Minus Query 37212 ATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCt-ttttttAATCCAAAAT-A 37269 ||||||||||| ||||| ||||| ||| |||| ||| ||| |||||||| |||| | | Sbjct 705937 ATCAATTCATTTGAAAATGTTAAACCTTGCATCAAAGATCTCTTTTTTAA--CAAACTGA 705880 Query 37270 TTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTG 37329 || |||| |||| || || |||| ||||| |||| | | |||||| |||||| Sbjct 705879 TTATACGAAAACTTCCACTGAAAAATATACTTTCAAATGCTACGAGTGCTACTAGACGTT 705820 Query 37330 TACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA 37389 | || || | | ||| ||||||||| | ||| |||||||| ||||| Sbjct 705819 T--------TTCAAAT-GATTCATTTATCCATTTTAAAGCCCATTCTGCCTTCTTTTTAA 705769 Query 37390 CACATTCAATTGTTTCAATTGCTTTTAAGAG 37420 ||||| |||||||||||||| || || || Sbjct 705768 CACATGGGATTGTTTCAATTGCATTAAAAAG 705738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316496437640