Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 3e-15 seq3 89.7 4e-13 seq6 86.0 5e-12 seq1 86.0 5e-12 seq5 84.2 2e-11 >seq4 Length=5450249 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||||||||||||||| ||| | ||| | || || || || ||||| ||||| Sbjct 5083974 TCTTTTTGAATATTGTAATCAGAGAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAA 5084033 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || |||||||| | |||| || || || || ||| || ||| ||| Sbjct 5084034 ATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTT 5084093 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | || ||||||| || || ||||| || || | |||||| ||| Sbjct 5084094 TCAATATTATCAGATCCTTCAACCTCCAAGGTGATAGTTTTACCAGTGAGAGTTTTAACA 5084153 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 5084154 AAGATTTGCAT 5084164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| ||| |||||||| || |||||||| ||| | ||| | || || Sbjct 5084184 ACTAAATGGAGAGTGGACTCCTTTTGAATGTTATAATCAGAAAGAGTACGACCATCTTCT 5084243 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||||||||| || | || |||||||| | |||| || || || || | Sbjct 5084244 AATTGTTTACCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGA 5084303 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || |||||| | | | || || | || || || | || || ||||| Sbjct 5084304 ATTTTAGCCTTTACATTTTCAATATTATCAGAACCTTCAACTTCTAAAGTGATAGTTTTA 5084363 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||| ||||| || ||||| Sbjct 5084364 CCAGTGAGAGTTTTAACAAAGATTTGCAT 5084392 >seq3 Length=6357299 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||| || ||| ||||||||||||||||| ||||| ||| | ||| | || Sbjct 5878794 AAAACTAAATGGAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGACCATCT 5878853 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || ||||||||||| || | || |||||||| | |||| || || || || Sbjct 5878854 TCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCT 5878913 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 || || |||||| | | | || || | || || |||| || || ||| Sbjct 5878914 TGGATTTTAGCCTTTACATTTTCAATATTATCAGAACCTTCAACTTCCAAAGTGATAGTT 5878973 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | |||||| ||||| || ||||| Sbjct 5878974 TTACCAGTGAGAGTTTTAACAAAGATTTGCAT 5879005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| || |||||||| ||||||||||| ||| | ||| | || || Sbjct 5640663 ACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTACGACCATCTTCT 5640604 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| || || || | || ||||| || | || | || || ||||| | Sbjct 5640603 AATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGA 5640544 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| ||| | | | ||||| |||| || || | || || || || Sbjct 5640543 ATCTTTGTTTTAACATTTTCAATATTATCTGAGCCCTCAACTTCAAGAGTGATGGTCTTA 5640484 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| ||||| || ||||| Sbjct 5640483 CCAGTTAATGTTTTGACAAAGATTTGCAT 5640455 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| || |||||||| ||||||||||| ||| | ||| | || ||| Sbjct 5640891 ACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTACGACCATCCTCC 5640832 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || |||||||| || || || || |||||||| | |||| || || ||||| Sbjct 5640831 AATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 5640772 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | || || | || || || | ||||| || || Sbjct 5640771 ATTTTGGCTTTAACATTCTCAATGTTATCAGAACCTTCAACTTCGAGTGTAATAGTCTTA 5640712 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| |||||||| ||||| Sbjct 5640711 CCAGTGAGGGTTTTGACAAAAATTTGCAT 5640683 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||||| |||||||||||||| ||| | ||| | || || Sbjct 5640435 ACCAAGTGGAGAGTTGATTCTTTTTGGATATTGTAATCAGAGAGAGTACGACCATCTTCT 5640376 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| || || || || || |||||||| | |||| || || || || | Sbjct 5640375 AATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGA 5640316 Query 48678 ATCTTTTGTTTTACA 48692 |||||| ||||||| Sbjct 5640315 ATCTTTGTTTTTACA 5640301 >seq6 Length=3602379 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||| || || |||||||||||||| || || || ||| | ||| | || Sbjct 961246 AAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCTGAAAGAGTACGACCATCT 961187 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || ||||| || || || | || |||||||| | ||||| || || || || Sbjct 961186 TCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGGGGAATACCTTCTTTATCT 961127 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 |||||| ||| ||| | | | ||||| | || || || | || || ||| Sbjct 961126 TGAATCTTGGCTTTAACATTTTCAATATTATCTGAACCTTCAACTTCTAAGGTGATAGTT 961067 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | |||||| |||||||| ||||| Sbjct 961066 TTACCAGTGAGAGTTTTAACAAAAATTTGCAT 961035 >seq1 Length=4923596 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 ||||||||||| || || || ||||||||||| ||||| |||| | | ||| | || Sbjct 2811749 AACACCAAATGAAGAGTTGATTCCTTTTGAATATTATAATCTGATAAAGTACGACCATCT 2811690 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || ||||| || || || || || |||||||| | |||| || || || || Sbjct 2811689 TCTAATTGTTTACCTGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCT 2811630 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 || || ||| ||| | | | || || | || ||||| | || || ||| Sbjct 2811629 TGGATTTTAGCTTTAACATTCTCGATATTATCAGAACCTTCAACCTCTAAAGTGATAGTT 2811570 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | |||||| |||||||| ||||| Sbjct 2811569 TTACCAGTGAGAGTTTTAACAAAAATTTGCAT 2811538 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 ||||| ||||| || || |||||||||||||||||||| |||| | | || | || Sbjct 2811977 AACACTAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCTGATAAAGTACGGCCATCT 2811918 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || |||||||| || || || || |||||||| | |||| || || || || Sbjct 2811917 TCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCT 2811858 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 || || ||| ||| | | | || || | || || || | || || ||| Sbjct 2811857 TGGATTTTAGCTTTAACATTCTCGATATTATCAGAACCTTCAACTTCTAATGTGATGGTT 2811798 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | |||||| |||||||| ||||| Sbjct 2811797 TTACCGGTGAGAGTTTTAACAAAAATTTGCAT 2811766 >seq5 Length=5125352 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| || |||||||||||||| ||||| ||| | ||| | || || Sbjct 2812550 ACTAAATGGAGAGTGGATTCCTTTTGAATATTGTAGTCAGAGAGAGTACGACCATCTTCT 2812491 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| || || || | || |||||||| | |||| || || ||||| | Sbjct 2812490 AATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 2812431 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | || || | || || |||| || || || || Sbjct 2812430 ATTTTGGCTTTGACATTTTCAATGTTATCAGAACCTTCGACTTCCAATGTGATGGTCTTA 2812371 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||||||||| || ||||| Sbjct 2812370 CCAGTCAAGGTTTTTACAAAGATTTGCAT 2812342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937409650243