Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq6 172 1e-37 seq5 89.7 1e-12 >seq6 Length=3602379 Score = 172 bits (190), Expect = 1e-37 Identities = 332/485 (68%), Gaps = 11/485 (2%) Strand=Plus/Plus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGATGATCTAATTCAGAT 150366 ||| |||||| | ||||| |||||||| | || || || | | | ||| ||| Sbjct 116699 AGAGGGTAAATTAGATCCTGTAATTGGTAGAGATGAAGAGATTCGTCGTGTTATT-AGAG 116757 Query 150367 T-CTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAA 150425 | ||||| | | ||||||||| ||| | || |||||||||| ||||||||||||| Sbjct 116758 TACTTTCCAGAAGAACCAAAAACAATCCAGTTTTGATTGGTGAACCTGGTGTTGGTAAAA 116817 Query 150426 CACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGA 150485 | | | ||||| || ||||||||||| || | ||||||| |||| ||| | ||| Sbjct 116818 CTGCAGTTGTTGAAGGTTTAGCACAACGTATTGTACGTGGTGATATTCCTGATAATTTGA 116877 Query 150486 AAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTG 150545 | | || || | | ||| ||||||||||||| | ||| ||| | |||||||||| Sbjct 116878 ATGCACGTG---TTATAGCATTGGATATGGGTGCATTAATTGCCGGTGCAAAGTATCGTG 116934 Query 150546 GTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGA---ACGCGATGATG 150602 |||| || ||||||||| || | | | || ||||| | ||||| | | || | Sbjct 116935 GTGATTTTGAAGAACGTTTAAAAGCTGTACTTAAAGAAGTTAAAGATTCAAATGGTGGTA 116994 Query 150603 TTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTT 150662 | ||| | ||||| |||||||||||| | ||||||||||| || || ||| Sbjct 116995 TCATTTTATTCATTGATGAAATCCATTTGGTATTGGGTGCTGGTAAAAC---CGATGGTG 117051 Query 150663 CTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATCG 150722 | ||||| || | || ||||| | | | |||||| ||||| || | Sbjct 117052 CAATGGATGCTGCAAACTTATTGAAACCAATGTTGGCAAGAGGTGAACTTCGTTGTATTG 117111 Query 150723 GTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTC 150782 |||| ||||| | |||||||||||| || || | ||||| ||| ||||| | | |||| Sbjct 117112 GTGCTACAACATTGGATGAATATCGTCAATACGTCGAAAAGGATCCAGCATTTGAACGTC 117171 Query 150783 GTTTC 150787 ||||| Sbjct 117172 GTTTC 117176 >seq5 Length=5125352 Score = 89.7 bits (98), Expect = 1e-12 Identities = 128/179 (72%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 150311 GGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGATGATCTAATTCAGATTCTT 150370 |||||| | || ||| |||||||| | || ||| || | | |||||| | | Sbjct 2301552 GGTAAATTAGACCCAGTAATTGGTAGAGATGAAGAAATTCGTCGTACAATTCAAGTATTA 2301493 Query 150371 TCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAA 150430 | | | ||| ||||| ||| | ||| ||||||||||||||||||||||||| | Sbjct 2301492 AGTAGAAGAACTAAAAACAATCCAGTGTTGATTGGTGAACCAGGTGTTGGTAAAACTGCA 2301433 Query 150431 ATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGA 150489 || ||||| || ||||||||| | || ||||||||||| |||||| ||| ||||| Sbjct 2301432 ATTGTTGAAGGTTTAGCACAAAGAATTATAAATGGTGATGTACCAGATAGTAT-AAAGA 2301375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147589797156418