Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq5 232 8e-56 >seq5 Length=5125352 Score = 232 bits (256), Expect = 8e-56 Identities = 477/698 (68%), Gaps = 30/698 (4%) Strand=Plus/Plus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 ||||| | |||||| | || | ||| ||||| | || ||||| ||||| |||||| Sbjct 44734 AATGGAGCGAGATGGGATTTAACGCAAATTGGACCCATACCTGGACCACCACCACCATGT 44793 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGT 138281 |||||||| || || ||||| | ||||| |||||| ||||| |||||| |||| ||| Sbjct 44794 GGAATACAAAAAGTTTTATGAAGATTTAAATGACAAACATCGGCACCAATATCACCTGGA 44853 Query 138282 TTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTG 138341 ||||| || || || || | |||||||||||| | ||| || |||||||||||| Sbjct 44854 CGACAAAGACCAACTTGAGCGTTCATATTTGCACCATCCATATAGACTTGACCACCATTG 44913 Query 138342 TCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGA 138401 |||||| ||| | ||| || | || |||||||||||||||||| |||||| Sbjct 44914 GCATGAATGATATCACAAATATCATTGGCACCCTCTTCAAATACACCATGAGTGGATGGA 44973 Query 138402 TATGTAATCATAATACATGAG-AGTTCAAATGTA--TTCATGATT----GCTTTCTTCTC 138454 || || ||||||| ||| || | |||||| || ||| || ||||| | Sbjct 44974 TAAGTGATCATAA-----GAGCAG--CCAATGTATCTTTATGTTTTTCAGCTTTAGCTTT 45026 Query 138455 TAGATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCC 138514 ||||| | || || || |||| |||||| | ||| | ||||||||||| || Sbjct 45027 AAGATCGGCAACATCGATATTACCATTGGTATCACAATCTACAACAACAACTTTCATACC 45086 Query 138515 TGCCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATT 138574 |||| | ||||| || |||||||| ||||| || || |||| || ||||| ||||| Sbjct 45087 AACCATTGCAGCACTTGCTGGATTAGTACCATGAGCAGAGACTGGAATGAGACAAACATT 45146 Query 138575 TCTTTTATCATCTCCTGATC-CTTGATG----ATATGCTTGGATTGCTAACAGTCCTGCA 138629 ||||| | || ||| | |||| | ||| | | ||| | | | || ||| Sbjct 45147 TCTTTGA----CT-TTGACCAATTGAAGTTAAATAAGAACGAATTACCATTAAACCAGCA 45201 Query 138630 TACTCACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCA 138689 || ||||| ||||| || || || |||||||| || | ||| ||||| |||| ||| Sbjct 45202 TATTCACCTTGTGAACCAGCATTTGGTTGTAAAGAACAACCATCGAAACCAGTGACTTCA 45261 Query 138690 CATAACCATTTCTGTAAGTCA-TCTATTATCTTTTGATAACCCATGGTCTGTATCATAGG 138748 ||||| ||| | || | | | || | || | | |||||| | | || | || Sbjct 45262 CATAA-CATATTTGAGATTGATTCAAACATTTCCTTATAACCAAGTGATTGATTAGCTGG 45320 Query 138749 TGTATGTGGATGCACGTTG--GCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCT 138806 | | |||||| | ||| ||||||| |||||| || || || ||| | | Sbjct 45321 TACAAATGGATGAA--TTGAATTAAATTCTGGCCATGAAACTGGATACATTTCAGTGGTA 45378 Query 138807 GCATTTAGTTTCATTGTGCAACTACCAAGTGGAACCAT 138844 ||||||| ||||||||| |||||||| | ||||| ||| Sbjct 45379 GCATTTAATTTCATTGTACAACTACCCAATGGAATCAT 45416 Score = 156 bits (172), Expect = 5e-33 Identities = 163/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 139858 GCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATC 139917 ||||||||||||| || || ||||||||||| |||| ||||| |||| |||||||| | Sbjct 46469 GCATTGCCTCTGCAGCAGCGGTTGCTTCATCCAATAATGATGCATTTGACATTGGTAAAC 46528 Query 139918 CTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATA 139977 |||||| |||| | | |||||| |||| |||||| ||||| | || ||| | Sbjct 46529 CTGTAAACTCTGATACCATAGTTTGGAAATTCAATAAACTCTCCAAACGACCTTGACTAA 46588 Query 139978 TCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCT 140037 |||| |||||||| || ||||| | ||| ||||||| |||||||| | || ||| || | Sbjct 46589 TCTCTGCTTGATATGGTGTGTATGGTGTATACCAACCTGGATTCTCTAAAATGTTACGTT 46648 Query 140038 GTATGACTGGGGGTGTAATGGTTCCATAGTATCC 140071 | || || | |||||||| |||||||| || || Sbjct 46649 GAATTACATGTGGTGTAATTGTTCCATAATAACC 46682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998103263320