Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 262 5e-65 seq3 91.5 2e-13 >seq4 Length=5450249 Score = 262 bits (290), Expect = 5e-65 Identities = 1129/1763 (64%), Gaps = 54/1763 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 ||||| ||||||| ||||| ||| | || || ||||| || |||||| | || |||| | Sbjct 1504159 CCACAACACATGTTGATGCGTGTCTCCATTGGTATCCATGGCGAAGACCTCGAATCTGCC 1504218 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | | || ||| | |||| | |||||| ||| || |||||||| || ||| Sbjct 1504219 ATCAACACCTACAAACGTTTGTCTGAGAAATTGTTCACTCATGCCACACCAACTCTATTC 1504278 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || ||||||||| ||| || ||||| ||| ||| | | | |||||||| Sbjct 1504279 AACGCAGGTACACCATCACCACAAATGTCATCTTGTTTCTTGGTTCAAATGAAGGAGGAT 1504338 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 |||||| | ||||| |||| ||| | | | ||||| | || |||||| | || || Sbjct 1504339 TCAATCGATGGTATTTATGACACTTTGAAACAATGTGCACTCATTTCAAAGAGTGCCGGT 1504398 Query 75452 GGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 |||||||| || ||| || || | | | || | || | |||||| || || || Sbjct 1504399 GGTATTGGTATTGCAGTTC-ATAAGATTCGTGCTGCTCAAAGTTATATTCGTGGTACCAA 1504457 Query 75511 TGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 |||| ||| || ||||| | | ||||||||||| || || || | || || || || | Sbjct 1504458 TGGTACAAGCA-ATGGTTTGGTGCCAATGCTTCGTGTTTTCAATGATACTGCTCGTTACG 1504516 Query 75570 TAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | |||||| | || | | | ||||| || | || || ||||||||||||||||| Sbjct 1504517 TCGATCAAG-GTGGTGGCAAGAGAAAGGGTGCCTTTGCCGTTTACTTGGAACCATGGCAC 1504575 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 || ||| || | || || |||| || ||| ||| | |||||| | | Sbjct 1504576 GCTGATGTCTTTGAATTTATTGATCTAAAGAAAAACACTGGTAAGGAAGAGATGAGAGCT 1504635 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 |||||||| || | | || ||| || || |||| ||| | || || || | | Sbjct 1504636 AGAGATCTATTCTATGCTCTTTGGGTTAGTGATATTTTTATGGAACGTGTCGAACAAAAT 1504695 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAG 75805 || | ||| | || || |||||| | | ||||||||||| | || | ||| Sbjct 1504696 GGCGATTGGGCCCTCTTTTGTCCAAATGAAGCACCAGGTCTTGCTGAAACTCACTCAGAG 1504755 Query 75806 GAGTTTGAAGCCCTCTACACAAAGTATGAAG--AGGAGGGTAGAGCCAATGCGACTG-TA 75862 || | || ||||| || || |||| | | |||| || | | Sbjct 1504756 GAACATCGTGCTCTCTATTTGAAATACGAAGCAACACCTGACCTCCCAAGACGTGTCATT 1504815 Query 75863 CCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 ||| || ||||| || ||| | | || || || ||||| || |||| Sbjct 1504816 AAAGCTCAAGAACTTTGGTTCGCCATTATGGAGTCTCAAGTTGAAACTGGTACTCCATTC 1504875 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 || | ||||||||||| ||||| || || ||||||||||| || || || | Sbjct 1504876 ATTTTGTACAAGGATGCCTGTAATGCTAAATCCAATCAAAAGAATTTAGGTACCATTAGT 1504935 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042 || |||||||| || || || | | |||||| ||||| | || ||||| Sbjct 1504936 AGTAGTAATCTTTGTACCGAGATCATTCAATACACATCACCAGATGAAATCGCCGTTTGT 1504995 Query 76043 AATTTGGCATCAATCGCCCTTCCAAAGTATGT----CAATGAAGAGACTCGCACT----- 76093 ||| | || || || || |||||||||| ||| ||| | || ||| | Sbjct 1504996 AATCTTGCCTCTATAGCACTTCCAAAGTTTGTTCGTCAAAAAGTAGGCTCAACCGATCCA 1505055 Query 76094 ------------TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAAT 76141 ||||| || || || ||||||||||||| | | ||| ||| Sbjct 1505056 AAAGAAAAAGAGTTTGACCATCAATTCCTATTTGAAATCACAAAGTTAATAACCGTCAAT 1505115 Query 76142 CTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCG-CGAAAG--TCTAAT 76198 || ||| |||| || | || | |||||| || | ||| | | ||| || ||| Sbjct 1505116 CTTAACGTTATCATCGATCGTAACTATTATCCAGTGG---CTGAGGCTAAAACTTCAAAT 1505172 Query 76199 ATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGC 76258 | |||| | || |||||| | ||| |||||||| | || ||||| || ||| Sbjct 1505173 CTTAGACATCGTCCAATTGGTATTGGTATTCAAGGTTTGGCCGATGTTTTCATTAAAATG 1505232 Query 76259 CGCTACGCATTT-GATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCAT 76317 || || || ||| ||| | || ||| | | |||| | ||| |||||||| Sbjct 1505233 CG-TATGCCTTTCGATAGTGTTGCCGCCGCTAAATTAAATGTTGAAATCGCCGAAACCAT 1505291 Query 76318 GTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAA-GGTTCCTATGAGA 76376 || || | || || | ||||||||| || | | ||| ||||||| Sbjct 1505292 TTACTTTGCCGCTTTGACTGCCTCTCATGAATTGGC-GATCCGTGATGGTACCTATGAAT 1505350 Query 76377 CATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAA 76436 | || | ||||| || || ||| |||| | || || |||||||||||| || || | | Sbjct 1505351 CTTTCAAAGGTTCACCAGCTTCCAAAGGTATCCTCCAATTTGATATGTGG-AATGTTACA 1505409 Query 76437 CCAAGCTCAACTACGACT-GGGATGTTCTCAAGGAACGCAT---CAAGGAGAAGGGTCTT 76492 ||||| || | || | ||| | || ||||| ||| ||| || ||| | Sbjct 1505410 CCAAGTTCTCGTTGGAATTGGGCAGAGCTAAAGGATAACATTGTCAATAAGGGTGGTTTA 1505469 Query 76493 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 76552 ||||| || | || |||||||||||||| || || || |||||| | ||||| Sbjct 1505470 CGTAATTCACTCCTCATTGCACCAATGCCAACCGCTTCAACAAGTCAAATCCTTGGTAAC 1505529 Query 76553 AATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAG 76612 ||||||||||||||||| ||||| | ||||| ||| | | | |||||||| Sbjct 1505530 AATGAATGCTTTGAACCTTACACTTCCAACATTTACAGTCGTCGTGTTTTAGCAGGTGAA 1505589 Query 76613 TTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTC-TCTGGTCCAA 76671 || ||||||||||| || | || | || |||| | | ||||| | | ||||| Sbjct 1505590 TTCACAATTGTCAACAAACAATTACTCGAAGATCTCATGGA-ATTGGGCATTTGGTCACC 1505648 Query 76672 GGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCC 76731 || |||||| ||| || || || |||||||||||||| ||| | ||||| Sbjct 1505649 AGAGATGAAGAATCAAATCGTTGCTGCACGTGGTTCCATTCAATCCATCGGTGGCATCCC 1505708 Query 76732 AGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGA--TGTCATT 76789 |||||| | || | ||||| ||||| ||||||||| | ||||| | |||| Sbjct 1505709 TGATGATTTGAAAGAACTCTATAAAACAGTTTGGGAAATCCG--TCAAAGAACTCTCATC 1505766 Query 76790 GACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATG 76849 || ||||| || ||||||||| ||||| ||||||||||||||| | ||| | ||||| Sbjct 1505767 GATATGGCTGCTGATCGTGGTGCTTTCATCGATCAAAGTCAAAGTTTCAATGTTTTCATT 1505826 Query 76850 GAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTC 76909 | ||||| | | || ||| | || |||||| | ||| | ||||| | || | Sbjct 1505827 GCTGAACCAACCTTTGCTAAACTCACCTCAATGCATTTCTACTCATGGAAGAAAGGTTTA 1505886 Query 76910 AAAACCGGAATGTACTATCTCCG 76932 || || || ||||||||||| || Sbjct 1505887 AAGACTGGTATGTACTATCTTCG 1505909 Score = 107 bits (118), Expect = 2e-18 Identities = 209/306 (68%), Gaps = 11/306 (4%) Strand=Plus/Minus Query 175213 GCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGA 175272 || |||| ||| ||||||| |||| | ||| | ||| | || ||| || || Sbjct 1753101 GCTAAAGTTGAGATTGAAGAATTTGTAAACTTTTTAAAGAATCCAAAGAAATTCCATGAC 1753042 Query 175273 AGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACC 175332 | |||||| ||||| || |||| || || | | ||| |||||||| || || || Sbjct 1753041 ATTGGTGCAAAGATACCAAGAGGTGCTATTTTAGTTGGTCCACCAGGTACTGGTAAAACT 1752982 Query 175333 CTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC-ATCC----AGTGCTCTG 175387 | | || ||| | ||| |||||| ||||||| |||||| || | |||| | Sbjct 1752981 TTGATTGCTAAAGCAACCGCTGGTGAAGCAAATGTACCATTCTATTCTACAAGTGGTT-- 1752924 Query 175388 CCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTG 175447 || | || || ||||||||||||||||| ||| | | | ||| | ||||| |||| Sbjct 1752923 ---CAGATTTCGTAGAGATGTTTGTTGGTGTTGGTCCATCACGTGTTAGAGATCTATTTG 1752867 Query 175448 AAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCA 175507 || || | | ||| |||||||||||| ||||| ||||| |||||||| || || | Sbjct 1752866 AACAGGCTAGAAAGAATGCACCATGTATTGTATTCATCGATGAAATTGATGCAGTTGGTA 1752807 Query 175508 -AGCAA 175512 ||||| Sbjct 1752806 GAGCAA 1752801 >seq3 Length=6357299 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 159113 TTATAAACTTTGGAATGAGTTTCTCCGGGTATTGATTTGGACCATAAACATTATTACAGC 159172 ||||||| |||||||| | ||| || || ||||| ||||||||||||| ||||||| | Sbjct 2091212 TTATAAATTTTGGAATAATTTTTTCAGGATATTGCTTTGGACCATAAATATTATTAGCTC 2091271 Query 159173 GAATTATTTTGATATTCATATCAAATGATTCTAT-ATATGAACGGACTATCATTTCGGCC 159231 | ||||| | | | | | |||||||| ||| |||||| | |||| ||| || Sbjct 2091272 TAGTTATTATAACAGGTAATTTAAATGATT-TATAATATGATTGAACTAAATGTTCTGCA 2091330 Query 159232 GCCGCTTTTGATGCTGAATATGGATTTGTTGG 159263 | ||||| ||||||||||||||| ||||| Sbjct 2091331 CCTGCTTTACTTGCTGAATATGGATTAGTTGG 2091362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569294258080