Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 192 2e-43 seq5 138 3e-27 seq3 122 3e-22 >seq4 Length=5450249 Score = 192 bits (212), Expect = 2e-43 Identities = 640/978 (65%), Gaps = 32/978 (3%) Strand=Plus/Minus Query 155571 ACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCT 155629 |||||| | ||| | ||||| || |||||||| || || | || | || | | | Sbjct 1505027 ACAAACTTTGGAAGTGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATG-T 1504969 Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||||| | ||||| || || ||| ||| | ||||| ||||||||||| || || Sbjct 1504968 GTATTGAATGATCTCGGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATT 1504909 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 |||||| ||||| ||||||||||| | |||| |||| || || || || | || | Sbjct 1504908 GGATTTAGCATTACAGGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAGA 1504849 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTG----CTTGTTGTATCTGCCTT 155805 |||| ||| | ||| || || | || ||||| |||| || | | Sbjct 1504848 CTCCATAATGGCGAACCAAAGTTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAGGTGT 1504789 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 | || ||||||| ||| || | || | ||||| || | ||| || || | Sbjct 1504788 T-GCTTCGTATTTCAAATAGAGAGCACGATGTTCCTCTGAGTGAGTTTCAGCAAGACCTG 1504730 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAA-----ATTTTATTACCGATTACACGCTCCAT 155920 | | || || ||||| || | |||| ||||| || ||| |||| ||||| Sbjct 1504729 GTGCTTCATTTGGACAAAAGAGGGCCCAATCGCCATTTTGTT--CGA---CACGTTCCAT 1504675 Query 155921 AAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC 155980 ||| | |||||| |||||| ||||||||| || || || || | ||| || | || Sbjct 1504674 AAAAATATCACTAACCCAAAGAGCATAGAATAGATCTCTAGCTCTCATCTCTTCCTTACC 1504615 Query 155981 -GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACA 156039 ||| || ||| ||| || | ||||| | ||||| || ||| |||| || | Sbjct 1504614 AGTGTTT-TTCTTTAGATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAA 1504556 Query 156040 TAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGA 156096 ||||| ||| || ||||||||||| ||||| || || |||||||| | ||||| Sbjct 1504555 CGGCAAAGGCACCCTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGA 1504496 Query 156097 AGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAAC 156156 | |||| ||||| || | | ||||||| || |||||||| || ||||||| ||| Sbjct 1504495 AAACACGAAGCATTGGCACCAAACCATTGCTTGTACCATTGGTACCACGAATAT---AAC 1504439 Query 156157 CA-GATGAGC--GAACATTATGAATATGTAGT-CCAATACCACCTGACCATTTAGAAATT 156212 || ||| ||| ||||||| || | | ||||||||||| | | || ||||| Sbjct 1504438 TTTGAGCAGCACGAATCTTATGAAC-TGCAATACCAATACCACCGGCACTCTTTGAAATG 1504380 Query 156213 TGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT-GATAG 156271 | || |||| || | ||| | ||||||| || || ||||| || | |||| || Sbjct 1504379 AGTGCACATTGTTTCAAAGTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACC 1504320 Query 156272 TAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGC 156331 ||| | || || | ||| ||| |||||| || ||||||||||| || ||||| || Sbjct 1504319 AAGAAA-CAAGATGACATTTGTGGTGATGGTGTACCTGCGTTGAATAGAGTTGGTGTGGC 1504261 Query 156332 ATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGA 156391 |||| | || | || | ||||| | | ||| || | | || || | Sbjct 1504260 ATGAGTGAACAATTTCTCAGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTC 1504201 Query 156392 CCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCC 156451 || || |||| || ||||| | |||| |||| || || |||||||| ||||| || Sbjct 1504200 GCCATGGATACCAATGGAGACACGCATCAACATGTGTTGTGGACGCTCGACAATTTTACC 1504141 Query 156452 ATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAA 156511 || || || |||| || | ||||||| ||||| || || || |||| | || Sbjct 1504140 ATTGATACGATGAAGATAGGAACGTTCCAATGTTTTGAATCCAAAGAAATCGTAATCGAA 1504081 Query 156512 ATCACGGTTGTAATCAAT 156529 |||||| | |||||||| Sbjct 1504080 ATCACGATAATAATCAAT 1504063 Score = 165 bits (182), Expect = 2e-35 Identities = 337/498 (68%), Gaps = 11/498 (2%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || || || || |||| | | |||||| ||| || ||||| | ||| || ||||| Sbjct 1752632 CTGTCGAATCTGCCAGGTCTAAGTAATGCCTTGTCCAAGATATCAGGTCTATTGGTTGCA 1752691 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 || | |||||||| | | | | ||||| |||||||| || | |||||| Sbjct 1752692 GCGAGTACAACAACATTCTTCAATGGTTTAAAACCATCCATTTCAACCAACAATTGATTT 1752751 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 | ||| | || | ||||||||| ||||| || |||| | | || | | || Sbjct 1752752 AATGTATTCTCACGTTCATCATTCGAACCAGAGAAACCACCTTTACCTCT---TGCTCTA 1752808 Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||||||| || ||||| | | ||| || | ||| | ||| || | || Sbjct 1752809 CCAACTGCATCAATTTCATCGATGAATACAATACATGGTGCATTCTTTCTAGCCTGTTCA 1752868 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 |||| ||||| ||||| |||| |||| ||||||| |||| ||||| || || ||| | Sbjct 1752869 AATAGATCTCTAACACGTGATGGACCAACACCAACAAACATCTCTACGAAATCTGAACC- 1752927 Query 289150 GATACTT---GAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 |||| |||| ||||| |||||||||||| || || ||| | || | | || Sbjct 1752928 ---ACTTGTAGAATAGAATGGTACATTTGCTTCACCAGCGGTTGCTTTAGCAATCAAAGT 1752984 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 ||||| || || ||||| || |||| | | | || |||||| ||||| ||| Sbjct 1752985 TTTACCAGTACCTGGTGGACCAACTAAAATAGCACCTCTTGGTATCTTTGCACCAATGTC 1753044 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | |||||| || |||||||||| | ||||| ||| |||| ||| ||| || || Sbjct 1753045 ATGGAATTTCTTTGGATTCTTTAAAAAGTTTACAAATTCTTCAATCTCAACTTTAGCTTC 1753104 Query 289326 ATCACATCCTGCTACATC 289343 | || ||||||||||| Sbjct 1753105 ACCAAGACCTGCTACATC 1753122 >seq5 Length=5125352 Score = 138 bits (152), Expect = 3e-27 Identities = 353/532 (66%), Gaps = 4/532 (1%) Strand=Plus/Plus Query 251512 TCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTG 251571 ||||| ||||| ||||| | ||||||||| |||| | ||| || |||| ||||| || Sbjct 1296630 TCCATCTCACCAAAACGTAAACCACCATCACGAGAACGACCTTCTACAGGTTGACGGGTT 1296689 Query 251572 AGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGA 251631 | | | | |||||| | || || || || ||||||| |||||||| || | | Sbjct 1296690 AAAATTTGAACAGGACCTCTTGAACGACTGTGAATTTTATCATCCACCATATGTTTTAAA 1296749 Query 251632 CGCTGGTAGAATGCGGGACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCG 251691 || || || | | ||||| || ||||| | | ||| | ||||| || | Sbjct 1296750 CGTTGATAATAAGTTGGACCAATAAAGATTTGAGCATCCATACGACGACCAGTGTGACCA 1296809 Query 251692 TTATACATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATA 251751 |||||||||||||| | ||| | || |||||||| ||| ||||| || | |||| Sbjct 1296810 TTATACATAACTTCATGACCAGTCATTTGATAACCAATTTTGTGTAGTGCTTGTGAAATA 1296869 Query 251752 TCACCAATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCA-A 251810 | | | ||| | | || ||| | || || | | ||| | ||||| || | Sbjct 1296870 GCTTCTACAGTGACATCAGTGAATGGGGTAGCATCACCTTCATCACC-AGTTGAAGCAGA 1296928 Query 251811 CACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATG 251870 ||||| || | ||| || ||| ||| | || ||||||||| ||||||||||| Sbjct 1296929 TACTTTACCAAGAAGACATTCAATCAATTGACCAATGGTCATACGAGATGGAATAGCATG 1296988 Query 251871 GGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTC 251930 ||||| | ||||| || || | || ||| ||||||| || | ||||| || | Sbjct 1296989 TGGATTTACAATGATATCTGGAACGATACCTTCAACAGTGAATGGTAAATCCTCTT-GAC 1297047 Query 251931 AATAA-TGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAATAA 251989 |||| | ||| ||| || ||||| || ||||||||| |||||||||||| || Sbjct 1297048 GATAAGCCATACCACAAGTACCTTTTTGACCATGACGAGAAGAGAACTTATCACCGATTT 1297107 Query 251990 CAGGACGGCGAACACTACGAAGGCGAACCTTACAGAAGTTGTAACCATCACC 252041 ||| || | ||||| ||||| ||||| || ||| |||| ||||| Sbjct 1297108 GAGGTACACGCATTGAACGAACACGAACTTTACAAAATTTGAAACCTTCACC 1297159 >seq3 Length=6357299 Score = 122 bits (134), Expect = 3e-22 Identities = 198/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 |||||| ||||||||||| ||| |||||||||||| || |||||||||| ||| | | Sbjct 1786439 ACGACGTTGAATATAACCGGTTTCAGATGTTTTTACGGCAGTATCAATTAAACCTTCTCT 1786380 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711 |||||||||||||||||| || | |||| || || || | || | | || |||| Sbjct 1786379 ACCACCCATAGCATGGAAAAAGAATTCTTGAGGAGTTAAACCACGAAGATATGAATTCTC 1786320 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||||||||| ||| || || || |||||| || ||||| | || || | Sbjct 1786319 TACGAAACCACGACTCTCTGGACCATAATCATCCTTGGTGAAATGTGGTAATGTTCTACT 1786260 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 | | || |||| ||||| || || || || || || || || | || | ||||| Sbjct 1786259 TTGGAAACCAAATGGAATACGTTTACCTTCGACATTTTGTTGACCTACACAAGCCATCAT 1786200 Query 302832 CTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||| || ||||| | | || || || || ||| ||||||| Sbjct 1786199 CTGTGAGATATTGATGAAAGAACCTTTTGAACCTGCAGTTACCAT 1786155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816826835817