Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq5 105 8e-18 >seq6 Length=3602379 Score = 107 bits (118), Expect = 2e-18 Identities = 144/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 114953 AAGTTGAACTTCCACCTAATACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTA 115012 || ||| | ||||| | ||| ||||| ||||||| ||||||| |||||| | | Sbjct 2805163 AAATTGCAATTCCAGATGGTACCTATGGTAGAATTGCACCAAGATCAGGTTTAGCATGGA 2805104 Query 115013 AAAATGGTATTGAAGTAGGAGCAGGTGTTGTTGATGAAGATTATCGAGATAATTTAATGG 115072 ||||| || || || || |||||| ||||| ||||||| ||| |||| | ||| Sbjct 2805103 AAAATTTCATCGATTGTGGTGCTGGTGTTATTGATTCAGATTATAGAGGTAATGT--TGG 2805046 Query 115073 T-TA-TTTTATATAACCATTCAGATGTTGATTTTAAAATTGAAGTTAAAGATAGGATTGC 115130 | || |||||| || |||||||||||||| |||||| ||| |||| ||||| | || Sbjct 2805045 TGTAGTTTTATTCAATCATTCAGATGTTGACTTTAAAGTTGCAGTTGGGGATAGAGTAGC 2804986 Query 115131 GCAATTAATTGTTGAAA 115147 |||||||| |||||| Sbjct 2804985 CCAATTAATCTTTGAAA 2804969 >seq5 Length=5125352 Score = 105 bits (116), Expect = 8e-18 Identities = 127/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 194236 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTGTGG 194294 ||| ||||| |||| || ||||| || | ||| | |||| ||||||||| |||||||| Sbjct 1297117 CGTGTACCTCAAATCGGTGATAAGTTCTCTTCTCGTCATGG-TCAAAAAGGTACTTGTGG 1297059 Query 194295 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 194354 |||| |||| ||||| ||| | ||||| || | |||||| || |||||||| || Sbjct 1297058 TATGGCTTATCGTCAAGAGGATTTACCATTCACTGTTGAAGGTATCGTTCCAGATATCAT 1296999 Query 194355 TATCAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 194404 | | |||||| || |||||| || | ||||||||| |||| | |||| Sbjct 1296998 TGTAAATCCACATGCTATTCCATCTCGTATGACCATTGGTCAATTGATTG 1296949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632489275849080