Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 seq3 93.3 3e-14 seq6 87.8 1e-12 >seq1 Length=4923596 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||| | ||||| |||||||| || | ||| || | Sbjct 2811766 ATGCAAATTTTTGTTAAAACTCTCACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 2811825 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | ||| | || ||| || || || |||||||| | || |||||| Sbjct 2811826 GATAATATCGAGAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAA 2811885 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||||| || |||||||| | || |||| | | || | | |||||||| Sbjct 2811886 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGATGGCCGTACTTTATCAGATTACAAT 2811945 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||||||||| | || | ||||||||| | |||| || Sbjct 2811946 ATTCAAAAAGAATCTACTCTCCATTTAGTGTTAAGATTAAGAGGTGG 2811992 Score = 87.8 bits (96), Expect = 1e-12 Identities = 165/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||| | || || ||||| || || | ||| || | Sbjct 2811994 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACAATAACATTAGAAGTTGAAGGTTCT 2812053 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | || ||| ||||| || |||||||| | || |||||| Sbjct 2812054 GATAACATTGAAAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAA 2812113 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| |||||||| | || |||| | || | | |||||||| Sbjct 2812114 CAAAGATTAATTTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAAT 2812173 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA--AAATAAAT 110510 ||||||||||||||||| | || | || |||||| | |||| ||||| ||| ||| Sbjct 2812174 ATTCAAAAAGAATCTACTCTCCATTTAGTTTTAAGATTAAGAGGTGGAAATTAAAAAAAA 2812233 Query 110511 AA 110512 || Sbjct 2812234 AA 2812235 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| |||||| | || || ||||| || || | ||| || | Sbjct 2811309 AATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAATAACATTAGAAGTTGAAGGTTC 2811368 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||| | | | | || ||| || ||| || |||||||| | || ||||| Sbjct 2811369 TGATAATATTGAGAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCA 2811428 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||| | |||| ||| |||||||| | || |||| | | || | | |||||||| Sbjct 2811429 ACAAAGATTAATTTTTGCCGGTAAACAATTAGAAGATGGCCGTACTTTATCAGATTACAA 2811488 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || | || | || |||||| | |||| || Sbjct 2811489 TATTCAAAAGGAATCAACTCTTCATTTAGTATTAAGATTAAGAGGTGG 2811536 >seq3 Length=6357299 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||||||||| ||||| || || ||||| || | ||| ||| || | Sbjct 5640455 ATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCA 5640514 Query 110332 CGATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 |||| | | | | || |||||| |||||| ||||||||||| | || || | Sbjct 5640515 -GATAATATTGAAAATGTTAAAACA-AAGATTCAAGACAAAGAAGGTATCCCACCAGACC 5640572 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||||||| | |||| || |||||||| | || |||| | || | | ||||||| Sbjct 5640573 AACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACA 5640632 Query 110451 ACATTCAAAAAGAATCTAC 110469 |||||||||| ||||| || Sbjct 5640633 ACATTCAAAAGGAATCCAC 5640651 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 110268 TTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC 110327 ||| ||||||||| ||||| ||||| ||||| || || ||||| || | ||| || Sbjct 5879694 TTATAATGCAAATTTTTGTTAAAACATTAACTGGTAAGACCATCACTTTAGAAGTTGAAG 5879635 Query 110328 CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGG 110387 | |||| | | | | |||||| |||||| || |||||||| | || | Sbjct 5879634 GTTCTGATAATATTGAAAATGTAAAAGCCAAGATTCAAGATAAAGAAGGTATTCCACCAG 5879575 Query 110388 ATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATT 110447 | ||||||||| | |||| || |||||||| | || |||| | || | | || | Sbjct 5879574 ACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGACT 5879515 Query 110448 ACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 | ||||||||||| ||||| || | ||| |||| |||||| | |||| || Sbjct 5879514 ATAACATTCAAAAGGAATCCACTCTCCACTTGGTATTAAGATTAAGAGGTGG 5879463 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || || ||||| ||||| || |||||||| || ||||| || | Sbjct 3722784 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 3722725 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || | ||| | || ||| |||||| ||||||||||| | || ||| Sbjct 3722724 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGAT 3722665 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | ||||| | ||| |||||||| | || |||| | || | | ||||| Sbjct 3722664 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTAT 3722605 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| ||||| || | ||| | || |||||| | |||| || Sbjct 3722604 AACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 3722555 >seq6 Length=3602379 Score = 87.8 bits (96), Expect = 1e-12 Identities = 165/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||||||||| || ||||| || || | ||| || | Sbjct 961719 ATGCAAATCTTTGTTAAAACTTTAACAGGTAAAACTATCACTTTGGAAGTTGAAGGTTCA 961778 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | | |||||| || ||| || |||||||| | || |||||| Sbjct 961779 GATAATATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCAGATCAA 961838 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| || |||||||| | || |||| | || | | || || || Sbjct 961839 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCAGACTATAAT 961898 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA--AAATAAAT 110510 |||||||||||||| || | || | || |||||| | |||| ||||| ||| ||| Sbjct 961899 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGGAAATTAAAAAAAA 961958 Query 110511 AA 110512 || Sbjct 961959 AA 961960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 165/243 (68%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 110259 ATAAGAGATTTAA--AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGT 110316 |||| | ||||| ||||||||| ||||| |||||| | || || ||||| || ||| | Sbjct 961019 ATAATAATTTTAAGGAATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACTATCACCTT 961078 Query 110317 CGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGG 110376 ||| || | |||| | | | | || ||| |||||| || |||||||| Sbjct 961079 AGAAGTTGAAGGTTCAGATAATATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGG 961138 Query 110377 CGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAAC 110436 | ||| |||||||||||| | |||| || |||||||| | || |||| | || Sbjct 961139 TATTCCCCCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTAC 961198 Query 110437 AATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGG 110496 | | || || || |||||||||||||| || | || | || |||||| | |||| Sbjct 961199 TCTTTCAGACTATAATATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGG 961258 Query 110497 GGG 110499 || Sbjct 961259 TGG 961261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841393708213