Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 seq6 84.2 2e-11 >seq3 Length=6357299 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 107551 TTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGG 107610 ||| ||||||||||||||| ||||| ||||| || || ||||| || | ||| || | Sbjct 5879694 TTATAATGCAAATTTTTGTTAAAACATTAACTGGTAAGACCATCACTTTAGAAGTTGAAG 5879635 Query 107611 CTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGG 107670 | |||| | | | | |||||| |||||| ||||||||||| | || | Sbjct 5879634 GTTCTGATAATATTGAAAATGTAAAAGCCAAGATTCAAGATAAAGAAGGTATTCCACCAG 5879575 Query 107671 ATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACT 107730 | || || ||| | |||| || |||||||| | || || | || | | |||| Sbjct 5879574 ACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGACT 5879515 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 | |||||||||||||| || || | ||| |||| || ||||| |||| || Sbjct 5879514 ATAACATTCAAAAGGAATCCACTCTCCACTTGGTATTAAGATTAAGAGGTGG 5879463 >seq6 Length=3602379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| |||||||||||||| ||||| || || | ||| || | | Sbjct 961719 ATGCAAATCTTTGTTAAAACTTTAACAGGTAAAACTATCACTTTGGAAGTTGAAGGTTCA 961778 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||| | | | | |||||| || ||| ||||||||||| | || ||||| Sbjct 961779 GATAATATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCAGATCAA 961838 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| || |||||||| | || || | || | | ||||| || Sbjct 961839 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCAGACTATAAT 961898 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAA 107794 |||||||| || || || | || | || || ||||| |||| |||||| | ||||| Sbjct 961899 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGGAAATTAAAAAAA 961957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876600686249