Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq1 165 1e-35 seq17 100 5e-16 >seq1 Length=4923596 Score = 165 bits (182), Expect = 1e-35 Identities = 401/605 (66%), Gaps = 27/605 (4%) Strand=Plus/Plus Query 204775 GTGGTTATCTGACTGACCATAACTCGCGTATCTTTGTTAAGCCGGTCATGGGTAACTATG 204834 ||||||| || || ||||||||||| | ||||||||| || || | || Sbjct 151048 GTGGTTACCTAACCGACCATAACTCCAGGATCTTTGTTCGTCCTGTTACGG--------- 151098 Query 204835 TCGAAGGGCTGGGTAAGTTCTACGACTCGTTCGTGGAATCACGCTCAGCAACCAAAGCGG 204894 || |||| | |||| ||||| || | || || ||||||| || || || | || Sbjct 151099 TC-AAGGTATTGGTAGCTTCTATGAAGCCTTTGTTGAATCACATTCTGCTACTGAGGCCA 151157 Query 204895 CGTTGTTTACCAAGAAACCCCTGGAAGACTCCGAATGGTTTAACCGTAAAATGCAGTTGG 204954 | | |||||||||||||| |||| || || ||||||||||||||||| | || |||| Sbjct 151158 TGATCTTTACCAAGAAACCATTGGAGGATTCAGAATGGTTTAACCGTAAGTTACAATTGG 151217 Query 204955 TTGCACAAGCGGTGCAGAAGATCCATCTGGGGGAAGATTGTGGGTCGACGATAACAGTGC 205014 | | | || | ||| ||||||| || || ||||| || | || ||||| | Sbjct 151218 TCGGTTAGGCCATACAGCGCGTCCATCTTGGTGAGGATTGAGGTACTCAAATTACAGTAC 151277 Query 205015 CTATTGTTATGCGTCGTGGCTGGGCAAGTGCGATGGCCGGTACGTATTATCTGGATGATG 205074 | | | ||||||| |||||| | ||| ||||| |||| |||||| | || || Sbjct 151278 CGGTAATAATGCGTCCAGGCTGGTCCGGTGTAATGGCGGGTAAGTATTACGTAGACGACA 151337 Query 205075 ATGGATCG-TACAA---AATGATCACGGAAGAGGACAAGCATCTGGAGAACCGGTTACTC 205130 ||| | | || | | || | | |||| || || ||| | || Sbjct 151338 GTGGTCAGATGTAAGCCATTCATGA-GAAAGATGAA--------GGTAAACTG----CTG 151384 Query 205131 AATATCCGCTCTCCGATGTATTGTAACCATCCTGACCGTACCGGTATCTGTGAGCGGTGT 205190 ||| | || | ||||||||| | ||| | ||| | ||| | | |||||| ||| Sbjct 151385 CGTATAAGGTCACTAATGTATTGTCAGCATAAATATCGTTCGGGTGTTTATGAGCGCTGT 151444 Query 205191 TATGGGAAGTTAGCGGTATCCATTCCGTACTTCAATGTCGAAGGGAAAGTTGGGGATAAC 205250 ||||| ||||| || | || || ||||| ||||| || || || | ||| | ||| Sbjct 151445 TATGGTAAGTTGGCTATGTCGATCCCGTATTTCAACGTACTGGGCAAGATAGGGAAAAAC 151504 Query 205251 CAGGTGATCGTGGGGCACGTCAGTGCAACAGAAATCGGTGAGGATCTCTCACAGAAGATG 205310 | | || | |||||||| ||||||||| | | || | | | | |||||||||| Sbjct 151505 GAAGCCATTGCTGGGCACGTGTCCGCAACAGAATTTGATGCTGCTTTATAACAGAAGATG 151564 Query 205311 CTGTCAACCAAACACCTGGATACATCCTCGACGGTAGATCCGTTTGCTATTCGTCGTGCC 205370 |||| || |||||||||||||| || || ||||| ||||||||| |||| ||||| Sbjct 151565 TTGTCCACTAAACACCTGGATACTTCTTCTACGGTGGATCCGTTTATCATTCATCGTGAA 151624 Query 205371 GATGC 205375 ||||| Sbjct 151625 GATGC 151629 Score = 154 bits (170), Expect = 3e-32 Identities = 385/579 (66%), Gaps = 22/579 (4%) Strand=Plus/Plus Query 203569 CAAACCGAATCGCGATCATCATGTGCGTTGGGTGTGTGATCATGGTATTGAGTTGTTTGC 203628 |||| | || || |||||||||||| | |||||| ||| |||| | ||| || | || Sbjct 149861 CAAAGCAAACCGTGATCATCATGTGAGCTGGGTGATTGAACATGAAGTAGAGCTGCTAGC 149920 Query 203629 ACCAACTGACCGTCGCTACTTCGGGGCCGAGCAGGTACGGCGTATCATGAAGGAGCATGA 203688 |||||| || || | ||||| |||||| | | || || | |||| | ||||| Sbjct 149921 GTTAACTGATCGCTTGTATTATGGGGCAGAGCAGATTCTTCGCATTAAGAAGAACCATGA 149980 Query 203689 CTTCCCGGTTACACCCGTGACGT-ATCGTGCACCCGATGGGCGTATGGTCCGTACGCGTG 203747 |||||| | | || ||| |||| ||||| ||||| | | || || |||| Sbjct 149981 CTTCCCAAC-ATATCCTGCTCGTTATCGAGCACCTTATGGGAGGTTTGTGATAACTCGTG 150039 Query 203748 ATCCGGTGGTGATCGCGCCGATCTATATCATCCTGCTGGAAAAGATGGGCGAATACTGGG 203807 |||| || |||| | || | |||||||||||| ||||||||||| | ||||| | || Sbjct 150040 ATCCAGTAATGATTGTACCAGTGTATATCATCCTGTTGGAAAAGATGAGGGAATATTTGG 150099 Query 203808 CGTCGTGTGCGATTCCAAAACTCACACACTTCGGTACACTCTC-ATCCTTAACACAGGCG 203866 || | ||| | || || | | ||||||||||| | || || || || || | Sbjct 150100 TTTCCTATGCAGTGCCTAAGTTAATGCACTTCGGTACTTTATCTATTATT-ACTCAAGTA 150158 Query 203867 GATAAGTTTGCGTTGCCGTGGCGTAACACTCCAACCCGTTT---CGGTGAGTCTGAGTTG 203923 || |||| || | || |||||||| ||||| ||||| |||||||| || | Sbjct 150159 GACAAGTACGCCCTCCCTTGGCGTAATGTACCAACTCGTTTGGCTGGTGAGTCAGACATT 150218 Query 203924 CGTCTGTTCTTAGCAGCGTGTCGTGGCTATTATGCGAACCGCTTGCAAAGCATGGCTAAC 203983 ||||||||| | | |||| || | ||||| | | ||| || || Sbjct 150219 CGTCTGTTC-----------TGGCGGCTGGTACACAAACCG-TCTATTATCATTGCCAAT 150266 Query 203984 ACTCCGGCAATGCAGAAGGAAGCTGCATTGATGTTCTTGCGTCACGATACACCAATGAAC 204043 || ||||||||||||| |||| | | | ||| |||||||| || | |||||| Sbjct 150267 ACACCGGCAATGCAGA---AAGCAGTAGGTAAGTTATTGCGTCATGAGAATCCAATGCGT 150323 Query 204044 ATCCCGAACGTGATTGATGAAACGAAGACACCACTGGGGCGTGCACGTCCACTGCAGATG 204103 || || |||| ||||||| | ||||| || ||| || ||| |||||||| Sbjct 150324 ATTGACAATTTGATGGATGAAAGTGTATCTCCACTAGGTCGTAATCGACCAGTGCAGATG 150383 Query 204104 TATAAGCACAACCAGGGCTGTCGTGGTATTGAATTTGAA 204142 ||||| |||| || | |||||||||||| |||||| Sbjct 150384 TATAAACACATGCAAGCTTGTCGTGGTATTCGCTTTGAA 150422 Score = 143 bits (158), Expect = 5e-29 Identities = 517/788 (66%), Gaps = 48/788 (6%) Strand=Plus/Plus Query 202526 ATCTTTGCCCGTTCCCCTAACTTGACCGAAGGTGGCGATTATAAGTACGGTCGTGAAACC 202585 || ||||| | |||||||| ||||| || || || || || | ||||| ||||||| Sbjct 148980 ATTTTTGCACACTCCCCTAATTTGACAGAGGGCGGTGACTAAA--TACGGGTGTGAAACT 149037 Query 202586 AACGTAGCATTTATGTCATTACCGGAAGTCGAACAGGACGGAATGGTGGTAACAGAAAGC 202645 ||||| || |||||| |||| |||||||||||||| |||||| | | || ||| Sbjct 149038 AACGTGTGTTTCATGTCACTACCAGAAGTCGAACAGGATGGAATGATTGCTACGGAATCA 149097 Query 202646 TTCGCACAAGCCATGGCCTGCACCAAGATCGAAAGCCGTATCGCACAGTGGGGCGATGAT 202705 |||| | |||||||| || ||||| || || ||| | || ||||| || | Sbjct 149098 TTCGTTAATGCCATGGCGTGTGATAAGATGGAGAGTCGTTTATTGCAATGGGGTGAGAAC 149157 Query 202706 CAGGTG-TTGTTGAACCTGTATGGCGACGATGAGAACTACAAAGCGTTTCCGGATATCGG 202764 | || ||||| ||| ||||||||| | | ||| | ||||| Sbjct 149158 AATGTACTTGTTAAAC------------------AACTACAAACCTTATCCAGTGATCGG 149199 Query 202765 CGATAAGATTCGTGAAGATGGGATGTTGTTTGCGGTACGTAAGATCATGCCAGGTACTGG 202824 || | ||||| || ||||| | || || || | || || ||| | | | ||| Sbjct 149200 GGAACAAATTCGGGATGATGGTTTTTTATTCGCAATGCGCAATATCGAATCTGATGTTGG 149259 Query 202825 CATTGTCAATCTGACCCCAAAAGCCCT--TCGTACTTACGATCCGAACTTCGACTA-TCC 202881 | ||||| |||| | ||||| | | | | | ||| | ||| || | | | Sbjct 149260 TCTGGTCAACATGACTGCGAAAGCATTGATGGAAGTG--GATGTCATCTTGGATAAATGC 149317 Query 202882 GCAGTATGCTGAAGCCGGTGCCACGGTGGTGAACGT--CCAGGTGAACTCGGACCGCATG 202939 | ||| | || | |||| ||||| | ||| | ||| | || || ||||| || Sbjct 149318 GT-GTACGGCGAC-CTAGTGCAACGGTAATCAACATTACCA--TCAAGTCCAACCGCCTG 149373 Query 202940 CGTACAGGACGTACCGATGTGCAGTTCTATGATAAACAAGCTGAACGGTATGAACGTGCA 202999 |||||||| ||| | || || |||||||||||||||||| | || | |||||| ||| Sbjct 149374 CGTACAGGTCGTTCAGAAGTTCAGTTCTATGATAAACAATCCGACCCCTATGAAAAAGCA 149433 Query 203000 GCGCGTGAGTTCTCCAAGTC--TCTGCGTAAGATCTACGACGACCTCTATCGTA-CGT-A 203055 | ||||| || ||| | || ||||||| | || || || | ||| | ||| | Sbjct 149434 GACCGTGACTT-TCCTA-TCAATCTGCGTGGTGTGTATGAA-ACAT-TATTGAGTCGTCA 149489 Query 203056 TGGTCATGGCATGATTCTGGAACCTGAACTCAACCGGATGGTGACGGATGCCATCTCGGA 203115 ||| | | || | || ||| || ||| |||| | ||||||| || || Sbjct 149490 CCCACATACCTTAATGTTAGAGCCTAGTCTGAACACTTTGGTCAATAATGCCATATCTGA 149549 Query 203116 TACCGGCGGTATGGATCGCAAGATGAATAATCAAGGACAGATT--ATCA--GCG-TGGAC 203170 |||||| ||| ||||||| |||||| ||| || | | ||| ||| |||| Sbjct 149550 TACCGGTGGTTTGGATCGTCGAATGAATGCCCAA--ACTGGTGCAATCTTGGCGATGGAT 149607 Query 203171 AAAGGCACACAGGTCTATAACAAAGTCCCGATTGGTGACTGGCGTGTGAAGATCACCTTT 203230 ||||| ||| |||||||||| || || || || ||||||||| ||||| | ||| Sbjct 149608 AAAGGTGTTCAGATCTATAACAA-GTTCCTATCGGCTACTGGCGTGCTTAGATCTCTTTT 149666 Query 203231 GTTAAACGGATTGAAGCCGGCGTGCGCTTTAAGATCACCGATACCCATGGCGGTAAAGGT 203290 |||||| | |||| || || ||||| || |||||| | || | |||| ||||||||| Sbjct 149667 GTTAAATGCATTGTGGCAGGTGTGCGTTTCAAGATCTCTGACAGTCATGAGGGTAAAGGT 149726 Query 203291 GTTATCGT 203298 |||||||| Sbjct 149727 GTTATCGT 149734 Score = 84.2 bits (92), Expect = 4e-11 Identities = 166/246 (67%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 205838 GCCGGATGAAGTGGGTGTGGTGCTGGATGAGTTCTTCTCGTTACTGCGTCAGCGTTTGGG 205897 ||| ||||| || || | ||||| ||| ||||||| |||||| | | | | Sbjct 151700 GCCAGATGACGTAGGGATTGTGCTTGATCAGTTCTTAGAGTTACTTAACCGACTTCTACA 151759 Query 205898 TGTGAACATTGTTCATGCACAGATCATGCTGTATTCAGTGATGACGATGGACCCAGCCAA 205957 ||||| || |||||||| | || || ||||| || || ||| | |||||| ||| Sbjct 151760 GGTGAATATCGTTCATGCTGAAATGATTCTGTACTCGGTAATGGTGCGTGACCCAAGCAA 151819 Query 205958 AGGCGACTATCGTCTTCCGCGGGCGTATGAACCACGGCAGTTCTCTTCCTATCACGAATG 206017 || || | | ||||| || | |||| ||||||||| ||| ||||||||||| Sbjct 151820 GTTGGATCATTGCTTACCGCGCGCTAACGAACAACGGCAGTTTAGTTCTTATCACGAATG 151879 Query 206018 TATCGAGTACCGATCTCTCTCGGTCCAGCTCGTGTATCAGGAACAGGCAGCGGTGATGCT 206077 |||||| | || ||| | ||| ||| | ||||||| || || || | || ||| | Sbjct 151880 TATCGAATTCCCCAGTCTTTTGGTGCAGTTGCTGTATCAAGAGCAAGCGGATGTTATGAT 151939 Query 206078 GAAGCC 206083 ||| || Sbjct 151940 GAAACC 151945 Score = 84.2 bits (92), Expect = 4e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 206523 GGTTGGAGTACCAGTTAAATAAAGACCAGGGTGAAGTTACCACGAAGATCAATACCTTGC 206582 ||||| ||||||||||| | ||||| | || | || || |||||||| |||| Sbjct 152437 GGTTGCAGTACCAGTTAGAGAAAGATCCTTCTGGTATCACGACCCGAATCAATACATTGC 152496 Query 206583 AAACCGGTAAGGGAAAGAGCTTCTGTGGTATTTACAACATGGTCAAGCTGGGAAAAGTAA 206642 |||| ||||| ||||||| |||| || || ||||||||| |||| ||| || | | Sbjct 152497 AAACGGGTAAAGGAAAGACATTCTATGCCATATACAACATGTTCAAACTGCAGAAGCTCA 152556 Query 206643 CGGTCATTGTCATCATGCCAAAATACATCAATACGTGG-ATTGTGGCGCTGAATGACTTT 206701 | | |||| | | ||||| || ||||||| || ||| || |||| | |||||||| Sbjct 152557 CTGGCATTATGTTAATGCCGAAGTACATCACGACTTGGCATACTGGC-TTACATGACTTT 152615 >seq17 Length=1953 Score = 100 bits (110), Expect = 5e-16 Identities = 139/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 108481 GTTTGACATCGAATGGCTGAAAGGGCATGCGGGTCACCGTGGAAATCAGTTCGCTGACTA 108540 |||| ||| | ||| | ||||| ||||| ||||| |||| || | |||| ||||| Sbjct 760 GTTTACCATGCAGTGGGTTAAAGGTCATGCCGGTCATTGTGGTAACATGCTCGCCGACTA 701 Query 108541 CATGGCAACCCGTGGTGTCTTTAAAGGCCGTGTTGGTGACGCTACCCCGTATTATCAGAT 108600 ||||||||||||||||| || || ||| ||||| | | | | ||||| Sbjct 700 TATGGCAACCCGTGGTGTGTTCTGTGGTCGTCACGGTGATGAAAATC---ACATCCAGAT 644 Query 108601 CCAGGATGCCGGTGAGTACGATAAGTACAAAACTGAACGTCCGCGCTTTGTCACGCACTC 108660 ||||||| | ||| | || ||||| ||||||||||||||||| ||||||| || || Sbjct 643 TAAGGATGCTGCAGAGCATGAAAAGTAAAAAACTGAACGTCCGCGTTTTGTCAATCATTC 584 Query 108661 GCGCTGGTACTTCA 108674 ||||| || |||| Sbjct 583 TCGCTGATATTTCA 570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 867340355487840