Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq5 111 2e-19 seq6 95.1 2e-14 >seq5 Length=5125352 Score = 111 bits (122), Expect = 2e-19 Identities = 128/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||| ||||| |||| || ||||| || | ||| | |||| | ||||||| |||||||| Sbjct 1297117 CGTGTACCTCAAATCGGTGATAAGTTCTCTTCTCGTCATGGTC-AAAAAGGTACTTGTGG 1297059 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 |||| |||| ||||| ||| | ||||| || | | |||||| || |||||||| || Sbjct 1297058 TATGGCTTATCGTCAAGAGGATTTACCATTCACTGTTGAAGGTATCGTTCCAGATATCAT 1296999 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 | | |||||| || ||||||||| | ||||||||| |||| | |||| Sbjct 1296998 TGTAAATCCACATGCTATTCCATCTCGTATGACCATTGGTCAATTGATTG 1296949 Score = 84.2 bits (92), Expect = 3e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 193455 GGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACA 193513 || |||||||| | |||| | |||| | ||||||| ||||||||| ||| ||| Sbjct 1498368 GGTGATAAATTCTCTTCACGTCATGGTC-AAAAAGGTGTTTGTGGTATCATTGTCAAACA 1498426 Query 193514 AGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTG 193573 ||||||||||||||| | | | |||||| ||||| |||||||| ||||| || | Sbjct 1498427 AGAAGATATGCCATTCTCTGATCTAGGTATTTGTCCAGACATTATTATGAATCCTCATGG 1498486 Query 193574 TATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 | | ||||| | ||||| ||| | |||| |||| Sbjct 1498487 TTTCCCATCTCGTATGACTATTGGTAAAATGATTG 1498521 >seq6 Length=3602379 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/178 (73%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 114834 TACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAGAATGGAATTGAAGTAGG 114893 ||| ||||| ||||||| ||||||| |||||| | || ||| || || || Sbjct 2805144 TACCTATGGTAGAATTGCACCAAGATCAGGTTTAGCATGGAAAAATTTCATCGATTGTGG 2805085 Query 114894 AGCAGGTGTTATCGATGAAGATTATCAAGATAATTTAATGGT-TA-TTTTACATAACCAT 114951 || |||||||| ||| ||||||| || |||| | |||| || ||||| || ||| Sbjct 2805084 TGCTGGTGTTATTGATTCAGATTATAGAGGTAATGT--TGGTGTAGTTTTATTCAATCAT 2805027 Query 114952 TCAGATGTTGATTTTAAAATTGAAGTTAAAGATAGAATTGCTCAATTAATTGTTGAAA 115009 ||||||||||| |||||| ||| |||| |||||| | || |||||||| |||||| Sbjct 2805026 TCAGATGTTGACTTTAAAGTTGCAGTTGGGGATAGAGTAGCCCAATTAATCTTTGAAA 2804969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177274471480