Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-16 seq6 86.0 8e-12 seq3 84.2 3e-11 >seq1 Length=4923596 Score = 102 bits (112), Expect = 1e-16 Identities = 380/584 (65%), Gaps = 24/584 (4%) Strand=Plus/Minus Query 93140 GGGCTGCTCAAGATACTATGCCATTAGACTGGTCTTTACCTTTAGCCAAAGAACTTGCTT 93199 |||| || ||| || |||||| | || ||| | || || || || ||||| || Sbjct 1440769 GGGCAGCACAACCAACAATGCCACTTGATTGGGCATTGCCATTGGCAAAAGACATTCAAG 1440710 Query 93200 TATCTGGTAAAGAAACAATTATTTCATTCGGTGGAGCAAGTAACCCAGATATTTCATCTA 93259 ||||||| || || ||||||| ||||| ||| ||| | |||||| || | || Sbjct 1440709 AGAATGGTAAAAAAGTTATAGTTTCATTTGGTGGTGCATCTAATCAAGATATCTCTTGTA 1440650 Query 93260 AATTTTCAATTGATGAATTGGTTCAAACTTACTTTGATGTAAT-AGAATTATATAATCCA 93318 ||||||| |||| |||||| || | ||||| | || | | ||| |||||| || Sbjct 1440649 GATTTTCAGTTGAAGAATTGATTGAGACTTATAATACCGTGGTCACTATT-TATAATGCA 1440591 Query 93319 TCTGGATTAGATTTTGATTTAGAAAATGGTTTGTATGACGCAGAAAAAATAAGTTCAGCT 93378 | ||||||||||||||||||||| ||| ||| | | | | || || | |||| Sbjct 1440590 TATGGATTAGATTTTGATTTAGAGAATTCTTTATTCAATGATAAGAATATTGCATTAGCT 1440531 Query 93379 GTTGGCATTGTCAAATCTA--AATACCCTAATTGTAATATTTCTCTGACACTACCAACAA 93436 | | | | |||| | ||| || || ||||| | | ||||| |||||| Sbjct 1440530 TTGAAAAGTATTCAATCAAAGAATCCCACTCTTTTAATA--AGTTTAACACTTCCAACAT 1440473 Query 93437 TGCCAACTGGTTTAACGGCTGTTGGATTAAAACTTGTCTCAAT-TTTTCaaaaa--aaTA 93493 |||||||||||||||| | ||||| || || | ||| |||||| | || Sbjct 1440472 TGCCAACTGGTTTAACATCAAAAGGATTGGAA--AGTGTAAATGCATTCAAAGATCAAGG 1440415 Query 93494 ATTTTGATTTTGTGGTCAATGGTATGGCTATGGATTATTATTCTCCGGAAGCA-GCTTTG 93552 | || |||| | || ||||||||||| ||||||||||| | ||||| | | | Sbjct 1440414 A-CTTAATTTCATAGTTAATGGTATGGCAATGGATTATTA---TATGGAAGAATGGAAAG 1440359 Query 93553 --GATATGGGTAAAGCTGCCGTTGAAGCAGCAAAAAGTATTGCATCTCAACTGGCTAAAG 93610 ||||||||| | ||||| || || | || |||||| | |||| || | | Sbjct 1440358 ACGATATGGGTGAGGCTGCAATTCAATGTGTAACTAGTATTAAAAATCAATTGAAAACCG 1440299 Query 93611 TGTACCCATC------TGAACCATCTATATATTCTAAGGTAGGAATAACACCTATGATTG 93664 | |||||||| ||| | |||| || || | || || || ||||||| Sbjct 1440298 TTTACCCATCATTAAGTGATTCTGAAGCATATGGAAAAGTTGCTATTACTCCAATGATTG 1440239 Query 93665 GTCTAAATGATGATTTATCAATGTTTAAATTAAAAGATGCTGCT 93708 || ||||||||||| | ||||||| | | ||||||||| Sbjct 1440238 GTTTAAATGATGATCTTAGTATGTTTACCATTGATGATGCTGCT 1440195 >seq6 Length=3602379 Score = 86.0 bits (94), Expect = 8e-12 Identities = 120/167 (72%), Gaps = 10/167 (6%) Strand=Plus/Minus Query 120195 ACTTATGGTAGAATTGCTTCAAGATCTGGTTTATCATTTAAACATGGGATTGAAGTAGGA 120254 || |||||||||||||| ||||||| |||||| ||| ||| || || || || Sbjct 2805143 ACCTATGGTAGAATTGCACCAAGATCAGGTTTAGCATGGAAAAATTTCATCGATTGTGGT 2805084 Query 120255 GCGGGTGTTATTGATGAAGATTATCCCAATGAGTTAATGAT----TA-TTTTGCACAACC 120309 || |||||||||||| ||||||| ||| ||||| | || |||| ||| | Sbjct 2805083 GCTGGTGTTATTGATTCAGATTAT-----AGAGGTAATGTTGGTGTAGTTTTATTCAATC 2805029 Query 120310 ATTCAGACACCGATTTCAAAGTTGAAGTAGGGGATAGAATTGCCCAA 120356 ||||||| || || ||||||| ||| ||||||||| | |||||| Sbjct 2805028 ATTCAGATGTTGACTTTAAAGTTGCAGTTGGGGATAGAGTAGCCCAA 2804982 >seq3 Length=6357299 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 172886 ATTAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAA 172945 ||||| ||| | || ||| ||||| | || ||||||||| ||| | |||||||| Sbjct 2513659 ATTAAAGTTTCACAATTGTCAGGTTATGTAGCCGAACAAACTTCCTATCATCATGGTGAG 2513600 Query 172946 CAAAACCTTTG--TGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACA 173003 ||| |||| | ||| || | ||| | || || |||| |||||| ||||||| Sbjct 2513599 CAAT--CTTTAAATTCAACAATTGTTAAAATGGCTCATAATTTCGTAGGTTCAAATAATT 2513542 Query 173004 TAACATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAG 173063 || |||| | |||| |||||||||||||||| | | |||| ||| |||||| | Sbjct 2513541 TACCATTGTTAACACCAAGTGGTCAGTTTGGTACTCGTTTACAAGGTGGTTCAGATTCTG 2513482 Query 173064 CCGCATCAAGGTATATTTATACTAAAC 173090 | || | || ||||| | ||| |||| Sbjct 2513481 CATCAGCTAGATATATCTTTACAAAAC 2513455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655279664169000