Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq5 102 1e-16 seq6 93.3 5e-14 >seq5 Length=5125352 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGG 193051 ||| ||||| |||| || ||||| || | ||| | |||| | ||||||| |||||||| Sbjct 1297117 CGTGTACCTCAAATCGGTGATAAGTTCTCTTCTCGTCATGGTC-AAAAAGGTACTTGTGG 1297059 Query 193052 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 193111 |||| |||| ||||| ||| | ||||| || | |||||| || |||||||| || Sbjct 1297058 TATGGCTTATCGTCAAGAGGATTTACCATTCACTGTTGAAGGTATCGTTCCAGATATCAT 1296999 Query 193112 TATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 193161 | | |||||| || |||||| || | ||||||||| |||| | |||| Sbjct 1296998 TGTAAATCCACATGCTATTCCATCTCGTATGACCATTGGTCAATTGATTG 1296949 >seq6 Length=3602379 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 115118 AAGTTGAACTTCCACCTAATACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTA 115177 || ||| | ||||| | ||| ||||| ||||||| ||||||| |||||| | | Sbjct 2805163 AAATTGCAATTCCAGATGGTACCTATGGTAGAATTGCACCAAGATCAGGTTTAGCATGGA 2805104 Query 115178 AAAATGGTATTGAAGTAGGAGCAGGTGTTGTCGATGAAGATTATCGAGATAATTTAATGG 115237 ||||| || || || || |||||| | ||| ||||||| ||| |||| | ||| Sbjct 2805103 AAAATTTCATCGATTGTGGTGCTGGTGTTATTGATTCAGATTATAGAGGTAATGT--TGG 2805046 Query 115238 T-TA-TTTTACATAACCATTCAGATGTTGATTTTAAAATTGAAATTAAAGATAGGATTGC 115295 | || ||||| || |||||||||||||| |||||| ||| | || ||||| | || Sbjct 2805045 TGTAGTTTTATTCAATCATTCAGATGTTGACTTTAAAGTTGCAGTTGGGGATAGAGTAGC 2804986 Query 115296 GCAATTAATTGTTGAAA 115312 |||||||| |||||| Sbjct 2804985 CCAATTAATCTTTGAAA 2804969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628530877877760