Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 2e-14 seq6 93.3 8e-14 seq3 89.7 9e-13 seq5 84.2 4e-11 >seq4 Length=5450249 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/134 (75%), Gaps = 11/134 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| | ||||| || || ||||||||||| ||||| | || |||||||| Sbjct 5084193 AGAGTGGACTCCTTTTGAATGTTATAATCAGAAAGAGTACGACCATCTTCTAATTGTTTA 5084252 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||||| |||||||||| |||| | || |||| ||||||||||| || || Sbjct 5084253 CCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCC 5084312 Query 81753 TTTATATTTTCAAT 81766 |||| ||||||||| Sbjct 5084313 TTTACATTTTCAAT 5084326 >seq6 Length=3602379 Score = 93.3 bits (102), Expect = 8e-14 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 48999 ATTTTTTCGAATATGATTTGAGCTATTCTATCACCCTTGGATACATTAAATGGTATAGAA 49058 ||| |||| || || | ||| |||| |||||| || | || ||||| || | | Sbjct 2804965 ATTCTTTCAAAGATTAATTGGGCTACTCTATCCCCAACTGCAACTTTAAA--GTCAACAT 2805022 Query 49059 CTGAA--ATTAAATAATAGAACACCTACGTTACCTCTATAGTCTGAGTCAATTACACCAG 49116 ||||| ||| ||||| | ||||| || ||||||||||| ||||| ||||| ||||||| Sbjct 2805023 CTGAATGATTGAATAAAACTACACCAACATTACCTCTATAATCTGAATCAATAACACCAG 2805082 Query 49117 CACCTACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAG 49175 |||| || || |||| || | || | |||||||| || || |||||||| ||| Sbjct 2805083 CACCACAATCGATGAAATTTTTCCATGCTAAACCTGATCTTGGTGCAATTCTACCATAG 2805141 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/134 (74%), Gaps = 11/134 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || |||||||||||||| ||||| | || |||||||| Sbjct 961462 AGAGTTGATTCTTTTTGAATATTATAATCAGAGAGAGTACGACCATCTTCTAATTGTTTA 961403 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | || |||| |||||||||| |||| | || |||| ||||||||||| || ||| Sbjct 961402 CCAGCGAAAATTAATCTTTGTTGATCTGGGGGAATACCTTCTTTATCTTGAATTTTGGCT 961343 Query 81753 TTTATATTTTCAAT 81766 || | ||||||||| Sbjct 961342 TTAACATTTTCAAT 961329 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/134 (73%), Gaps = 11/134 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || |||||||| || || ||||| | || |||||||| Sbjct 961234 AGAGTTGATTCTTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCTAATTGTTTA 961175 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | || |||| |||||||||| |||| | || |||| |||||||||||||| ||| Sbjct 961174 CCAGCGAAAATTAATCTTTGTTGATCTGGGGGAATACCTTCTTTATCTTGAATCTTGGCT 961115 Query 81753 TTTATATTTTCAAT 81766 || | ||||||||| Sbjct 961114 TTAACATTTTCAAT 961101 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/134 (73%), Gaps = 11/134 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || |||||||| || || ||||| | || |||||||| Sbjct 961918 AGAGTTGATTCTTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCTAATTGTTTA 961859 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | || |||| |||||||||| |||| | || |||| ||||||||||| || ||| Sbjct 961858 CCAGCGAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATTTTGGCT 961799 Query 81753 TTTATATTTTCAAT 81766 |||| ||||||||| Sbjct 961798 TTTACATTTTCAAT 961785 >seq3 Length=6357299 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/134 (74%), Gaps = 11/134 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || ||||||||||| |||| ||| | || |||||||| Sbjct 2331808 AGAGTTGATTCCTTTTGAATATTATAATCTGATAAAGTACGACCATCTTCTAATTGTTTA 2331749 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| |||| ||||||||| |||| | || |||| |||||||| || || ||| Sbjct 2331748 CCTGCAAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCTTTATCTTGGATTTTAGCT 2331689 Query 81753 TTTATATTTTCAAT 81766 |||| ||||||||| Sbjct 2331688 TTTACATTTTCAAT 2331675 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/134 (74%), Gaps = 11/134 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || || ||||| ||||| ||||| | || |||||||| Sbjct 5879490 AGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTACGACCATCTTCTAATTGTTTA 5879549 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | || |||| ||||||||| |||| | || |||| |||||||||||||| ||| Sbjct 5879550 CCAGCGAAAATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTTGGCT 5879609 Query 81753 TTTATATTTTCAAT 81766 |||| ||||||||| Sbjct 5879610 TTTACATTTTCAAT 5879623 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/134 (73%), Gaps = 11/134 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || ||||||||||| |||| ||| | || |||||||| Sbjct 2332492 AGAGTTGATTCCTTTTGAATATTATAATCTGATAAAGTACGACCATCTTCTAATTGTTTA 2332433 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||||| |||||||||| |||| | || |||| |||||||| || || ||| Sbjct 2332432 CCTGCAAAGATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGGATTTTAGCT 2332373 Query 81753 TTTATATTTTCAAT 81766 || | ||| || || Sbjct 2332372 TTAACATTCTCGAT 2332359 >seq5 Length=5125352 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 95218 TGAAGTAATAGGTATAGACGAAGGTCAATTCTTCCTAGATATAGTAGAATTTAGTGAATC 95277 ||| ||||| ||||| || ||||| ||||| |||| ||| | ||| ||||||||||| Sbjct 2508695 TGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGA 2508636 Query 95278 GATGGCTAATTTAGGTAAAATAGTTATTATAGCCGCACTCAATGGT 95323 |||| ||| |||||||| ||||| || |||||||| ||||| Sbjct 2508635 CTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGT 2508590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903410737001760