Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4 152 1e-31 seq2 111 4e-19 seq3 93.3 1e-13 >seq4 Length=5450249 Score = 152 bits (168), Expect = 1e-31 Identities = 573/889 (64%), Gaps = 20/889 (2%) Strand=Plus/Plus Query 110274 ATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCT 110333 || |||||| |||||| | ||| || | ||||| |||||||| | |||||| | Sbjct 1504063 ATTGATTATTATCGTGATTTCGATTACGATTTCTTTGGATTCAAAACATTGGAACGTTCC 1504122 Query 110334 TATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTT 110393 ||| | | |||| ||||||| | || | || ||||| ||||||||||| | ||||| Sbjct 1504123 TATCTTCATCGTATCAATGGTAAAATTGTCGAGCGTCCACAACACATGTTGATGCGTGTC 1504182 Query 110394 GCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGT 110453 | |||||||| ||||| | || | || ||| || | || | || | Sbjct 1504183 TCCATTGGTATCCATGGCGAAGACCTCGAATCTGCCATCAACACCTACAAACGTTTGTCT 1504242 Query 110454 AAAAAGAAAGCT-ATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACA 110512 | || | | | | |||||| || || || ||||| |||||||| || | ||| Sbjct 1504243 GAGAA-ATTGTTCACTCATGCCACACCAACTCTATTCAACGCAGGTACACCATCACCACA 1504301 Query 110513 ATTGGCTTCTTGCTTTCTTC-TAGGAATTAACGATGATTCTATTGAAGGTATTTATGATG 110571 | || | ||||| |||||| | ||| || || ||||| || || ||||||||||| Sbjct 1504302 AATGTCATCTTG-TTTCTTGGTTCAAATGAAGGAGGATTCAATCGATGGTATTTATGACA 1504360 Query 110572 CTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATG 110631 || | ||| || ||| || ||||| || | | || || ||||||||| |||||| Sbjct 1504361 CTTTGAAACAATGTGCACTCATTTCAAAGAGTGCCGGTGGTATTGGTATTGCAGTTCATA 1504420 Query 110632 ATATTCG-----CTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACT 110686 | ||||| |||||| | || ||| | | || ||| | | ||| | Sbjct 1504421 AGATTCGTGCTGCTCAAAGTTAT---AT-TCGTGGTACC-AATGGTACAAGCAATGGTTT 1504475 Query 110687 TGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AA 110743 || |||||| | | || ||||| || ||||| || || ||||||||||| || Sbjct 1504476 GGTGCCAATGCTTCGTGTTTTCAATGATACTGCTCGTTACGTCGATCAAGGTGGTGGCAA 1504535 Query 110744 GAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTT 110803 |||||| || | ||||| | || | ||||| ||||| | ||| | |||||||| | Sbjct 1504536 GAGAAAGGGTGCCTTTGCCGTTTACTTGGAACCATGGCACGCTGATGTCTTTGAATTTAT 1504595 Query 110804 AGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAAT 110863 || || ||||| || ||||| ||||| | ||| |||| ||||| | Sbjct 1504596 TGATCTAAAGAAAAACACTGGTAAGGAAGAGATGAGAGCTAGAGATCTATTCTATGCTCT 1504655 Query 110864 GTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTG 110923 ||| || ||| | || ||| ||||||| || |||||||| ||| | || | || Sbjct 1504656 TTGGGTTAGTGATATTTTTATGGAACGTGTCGAACAAAATGGCGATTGGGCCCTCTTTTG 1504715 Query 110924 TCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983 ||| || | || ||||| |||| | | | || | | || || Sbjct 1504716 TCCAAATGAAGCACCAGGTCTTGCTGAAACTCACTCAGAGGAACATCGTGCTCTCTATTT 1504775 Query 110984 AAAATATGAAAAAGAAGGCAAGTTTCGCAAACAA---ATTCCAGCTCAAGAACTTTGGTT 111040 ||||| ||| | | | | | | || ||| |||||||||||||||||| Sbjct 1504776 GAAATACGAAGCAACACCTGACCTCCCAAGACGTGTCATTAAAGCTCAAGAACTTTGGTT 1504835 Query 111041 CAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATAT 111100 | || | || || |||||||||||||| ||||| | |||||||| || ||| Sbjct 1504836 CGCCATTATGGAGTCTCAAGTTGAAACTGGTACTCCATTCATTTTGTACAAGGATGCCTG 1504895 Query 111101 TAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAAT 111149 |||| ||||| ||||||| ||||||||| || |||| ||||||| Sbjct 1504896 TAATGCTAAATCCAATCAAAAGAATTTAGGTACCATTAGTAGTAGTAAT 1504944 >seq2 Length=8484197 Score = 111 bits (122), Expect = 4e-19 Identities = 122/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 |||||||| | ||||| ||||| |||||| | || || ||| |||| |||| | ||| Sbjct 7735105 TGTTCAATCGTCAACCTTCACTTCATAAACTTTCGATTATGTCTCACAAAGCAAGAGTTA 7735164 Query 305394 TATC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTT 305452 | | |||| ||| |||| || |||| | | | |||||| ||||| ||||| ||||| Sbjct 7735165 TGCCATGGAGA-ACACTTCGTTTCAATGAATGCGTTTGTACACCTTACAATGCAGATTTC 7735223 Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGG 305492 ||||| |||||||||||||| ||| |||| ||| || ||| Sbjct 7735224 GATGGTGATGAAATGAATATTCATTTACCACAAACAGAGG 7735263 Score = 93.3 bits (102), Expect = 1e-13 Identities = 286/432 (66%), Gaps = 13/432 (3%) Strand=Plus/Plus Query 131755 TAAAAATAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATG 131814 |||| ||||||||||| |||| | | | | |||| ||||||||||| |||||||| Sbjct 2356592 TAAAGATAAATTATTTAATGCAATTGAAACAATTCCATGTATTAAAAAGAAGGCAGAATG 2356651 Query 131815 GGCTATTAA-ATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTG 131873 ||| ||||| |||||| | ||||||| | | ||| | | | | || || |||| Sbjct 2356652 GGC-ATTAAGATGGAT---AAATGATTCAGATTCATTTGCAGAACGTTTGGTTGCATTTG 2356707 Query 131874 CTTGTGTTGAAGGTATATTCTTTTCA--GGTGCTTTCTGTGCTATCTTTTGGCTTAAGAA 131931 | ||||| ||||||| |||||| || ||| ||| | || |||||| | || || Sbjct 2356708 CAGCAGTTGAGGGTATAT--TTTTCAGTGGAAGTTTTTGTTCAATATTTTGGTTGAAAAA 2356765 Query 131932 GCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATT 131991 | | || || |||| || | |||| || ||| |||| || || | || |||| || Sbjct 2356766 GAGAGGTTTAATGCAAGGTTTAACATTTTCAAATGAATTAATTTCACGTGACGAAGGTTT 2356825 Query 131992 GCATACTGAATTTGCTATAT-TAATCTATAGAAAATTTGCTGATAAACTT-GATGAAAAT 132049 ||| ||| || || || | | |||| | ||| || | | ||| || ||| ||| Sbjct 2356826 ACATTGTGATTTCGC-ATGTCTTCTCTACA-CAAAGTTACAAAGAAAGTTGGATCCAAAA 2356883 Query 132050 AATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCT 132109 ||| | || | ||||| || || || || || ||||| || ||| ||| | Sbjct 2356884 GTCATTGAGAAAATGATAAGAGATGCTGTCGAATGTGAAAAGGAATTCATTTGCGAATCA 2356943 Query 132110 TTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAATTCGTT 132169 || || |||| ||||| ||||| | || ||| | |||||||| || | Sbjct 2356944 TTACCAGTGGATTTAATTGGTATGAACTCGCGTTCAATGTCTCAATACATTGAGTTTTGT 2357003 Query 132170 GCTGATCGTTTA 132181 |||||||||||| Sbjct 2357004 GCTGATCGTTTA 2357015 Score = 93.3 bits (102), Expect = 1e-13 Identities = 286/432 (66%), Gaps = 13/432 (3%) Strand=Plus/Minus Query 131755 TAAAAATAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATG 131814 |||| ||||||||||| |||| | | | | |||| ||||||||||| |||||||| Sbjct 3675194 TAAAGATAAATTATTTAATGCAATTGAAACAATTCCATGTATTAAAAAGAAGGCAGAATG 3675135 Query 131815 GGCTATTAA-ATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTG 131873 ||| ||||| |||||| | ||||||| | | ||| | | | | || || |||| Sbjct 3675134 GGC-ATTAAGATGGAT---AAATGATTCAGATTCATTTGCAGAACGTTTGGTTGCATTTG 3675079 Query 131874 CTTGTGTTGAAGGTATATTCTTTTCA--GGTGCTTTCTGTGCTATCTTTTGGCTTAAGAA 131931 | ||||| ||||||| |||||| || ||| ||| | || |||||| | || || Sbjct 3675078 CAGCAGTTGAGGGTATAT--TTTTCAGTGGAAGTTTTTGTTCAATATTTTGGTTGAAAAA 3675021 Query 131932 GCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATT 131991 | | || || |||| || | |||| || ||| |||| || || | || |||| || Sbjct 3675020 GAGAGGTTTAATGCAAGGTTTAACATTTTCAAATGAATTAATTTCACGTGACGAAGGTTT 3674961 Query 131992 GCATACTGAATTTGCTATAT-TAATCTATAGAAAATTTGCTGATAAACTT-GATGAAAAT 132049 ||| ||| || || || | | |||| | ||| || | | ||| || ||| ||| Sbjct 3674960 ACATTGTGATTTCGC-ATGTCTTCTCTACA-CAAAGTTACAAAGAAAGTTGGATCCAAAA 3674903 Query 132050 AATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCT 132109 ||| | || | ||||| || || || || || ||||| || ||| ||| | Sbjct 3674902 GTCATTGAGAAAATGATAAGAGATGCTGTCGAATGTGAAAAGGAATTCATTTGCGAATCA 3674843 Query 132110 TTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAATTCGTT 132169 || || |||| ||||| ||||| | || ||| | |||||||| || | Sbjct 3674842 TTACCAGTGGATTTAATTGGTATGAACTCGCGTTCAATGTCTCAATACATTGAGTTTTGT 3674783 Query 132170 GCTGATCGTTTA 132181 |||||||||||| Sbjct 3674782 GCTGATCGTTTA 3674771 >seq3 Length=6357299 Score = 93.3 bits (102), Expect = 1e-13 Identities = 400/620 (65%), Gaps = 58/620 (9%) Strand=Plus/Minus Query 279058 ATTATATGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGA 279117 |||| || | ||||||| | ||||||||||| ||||| || || ||||| | || Sbjct 2514550 ATTAAATCGATTTCCAAAT-TGGATGATGCAAATTGGGCAGGTGGATTAAAATCAAAGGA 2514492 Query 279118 ATGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATC 279177 |||| | || || | ||||| || |||||||| |||| || | || |||||| Sbjct 2514491 ATGTACATTGATTATAACTGAAGGTGATTCTGCAAAATCATTAGCATTGGCAGGTTTAAG 2514432 Query 279178 TGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCG 279237 ||| |||||||| || |||||| || || || ||| | ||||| || | |||| || Sbjct 2514431 TGTAGTTGGTCGTAATTCATATGGTGTTTTCCCATTACGTGGTAAGCTATTGAATGTACG 2514372 Query 279238 TGATAAAATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAA 279297 |||| | | || ||| ||| || | |||| ||| | | ||| Sbjct 2514371 TGAT---------------GTCGCTTCAAAACAATTATTATCCAATGAAGAAATTAATAA 2514327 Query 279298 T-TTAAAACAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATAC--ATCAA---- 279350 | ||| || || ||||| ||| || |||||| | | | ||||| || || Sbjct 2514326 TCTTACCAC-CATTTTGGGTTTATCTCA---TAAAAATTCCTATGATACCGATGAAAGTA 2514271 Query 279351 ------GTTTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTC 279404 |||||| ||||||| | |||| ||| || | || |||||| ||||| | Sbjct 2514270 TGGAAGATTTACGTTATGGTAGAGTTATGATTATGGCCGATCAAGATCATGATGGTTCAC 2514211 Query 279405 ACATTAAAGGATTAATACTTAATTGGGTTGA-TACTTTCTGGCCAGAATTGTTGAATCAA 279463 | |||||||| ||| | | |||| || | |||||| |||||| | | ||||| | Sbjct 2514210 ATATTAAAGGTTTAGTTATGAATTTCATTCACTACTTT-TGGCCAAATCTTTTGAAACGT 2514152 Query 279464 AATT---TTGTA-AGTGTGTTTCAAACACCAATTATTAAGGCAACTAAAGGT--AAAAAA 279517 || ||||| | | |||| |||||||| || || ||||||||| || || | Sbjct 2514151 GGTTTCCTTGTAGAATTTGTT----ACACCAATCATAAAAGCAACTAAAAGTTCAACTCA 2514096 Query 279518 GAAGAAGTATTTTATT--CATTGCAGAAGTTTGAACAATGGAAAGA------TTCAGTTG 279569 ||||| | ||| || |||| || | | |||| |||||| ||| |||| | Sbjct 2514095 AAAGAAATCTTTCTTTACCATTAAAG-ACTATGAAAAATGGAGAGAAACAATTTCATCCG 2514037 Query 279570 A-GAATT-CAGCCTCATTCCATACCAAGTATTTTAAAGGTTTAGCAACATCCAATACTAA 279627 | |||| | | || |||| || |||| ||||||||||| ||||| | || Sbjct 2514036 ATCAATTGAAACAATATACCAT--TAAATATTATAAAGGTTTAGGTACATCAACTAGCGC 2513979 Query 279628 GGAAGCAAAAGAATATTTTA 279647 || ||||| ||||| |||| Sbjct 2513978 AGAGGCAAAGGAATACTTTA 2513959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812176552401