Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3 114 3e-20 seq6 100 7e-16 >seq3 Length=6357299 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| |||||| | ||||| ||| |||| |||| ||||| Sbjct 3722766 AAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGTTCAGACAACATCGAAAAC 3722707 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| || || || ||| | |||||||| Sbjct 3722706 GTCAAAGCCAA-GATTCAAGACAAAGAAGGTATCCCACCAGATCAACAACGTCTTATCTT 3722648 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || || |||||||| | ||||| ||||||| ||| |||| || || || Sbjct 3722647 TGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTATAACATCCAAAAGGAATC 3722588 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || || ||| | ||||| ||| Sbjct 3722587 AACCCTCCACTTAGTTTTAAGA 3722566 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| |||||||||||||| ||| ||||||| | | ||| Sbjct 5878990 AAAACTCTCACTGGTAAAACTATCACTTTGGAAGTTGAAGGTTCTGATAATATTGAAAAT 5878931 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || ||||| |||||||| ||| || || |||||| | ||||| Sbjct 5878930 GTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATCTTT 5878871 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || || |||||||| | ||| | | || ||||| | || ||||| || Sbjct 5878870 GCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGACTACAATATTCAAAAAGAATCC 5878811 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||| || | ||||| ||| Sbjct 5878810 ACTCTCCATTTAGTTTTAAGA 5878790 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| |||||||| ||||| ||| ||||||| | | ||| Sbjct 5879218 AAAACTCTCACTGGTAAAACAATCACTTTAGAAGTTGAAGGTTCTGATAACATTGAAAAT 5879159 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || |||||||| |||||||| ||| || || ||| | || || || Sbjct 5879158 GTAAAGGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTT 5879099 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| | ||| | | || || ||| | || || || || Sbjct 5879098 GCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGACTATAACATTCAAAAGGAATCA 5879039 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | ||||| ||| Sbjct 5879038 ACTCTTCACTTAGTTTTAAGA 5879018 Score = 109 bits (120), Expect = 1e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 ||||| || || || ||||| ||||| || ||||| ||| | || || | |||| | | Sbjct 2332080 AAAACTCTTACTGGTAAAACCATCACATTAGAAGTTGAAGGCTCAGATAATATCGAGAAC 2332139 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||| |||||||| |||||||| ||| || ||| |||||| | ||||| Sbjct 2332140 GTTAAAGCTAAA-ATTCAAGATAAAGAAGGTATTCCACCAGACCAACAAAGATTAATCTT 2332198 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || || |||||||| | ||||| | || |||||| | || || || || Sbjct 2332199 TGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGACTACAACATTCAAAAGGAATC 2332258 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | || || ||| Sbjct 2332259 TACTCTTCATTTAGTATTAAGA 2332280 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 ||||| || || || ||||| |||||||||||||| ||| |||| || | |||| | Sbjct 2332308 AAAACTCTTACTGGTAAAACAATCACTTTGGAAGTTGAAGGTTCAGATAATATCGAGAAT 2332367 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||| || ||||| |||||||| || || || |||||| | ||||| Sbjct 2332368 GTTAAAGCTAAA-ATCCAAGATAAAGAAGGTATCCCACCAGATCAACAAAGATTAATCTT 2332426 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || || |||||||| | ||||| | ||||| || | || || || || Sbjct 2332427 TGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTATAATATTCAAAAGGAATC 2332486 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 |||||||| | || || ||| Sbjct 2332487 AACTCTTCATTTAGTATTAAGA 2332508 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || |||||||| ||||| ||| ||||||| | | ||| Sbjct 5879674 AAAACATTAACTGGTAAGACCATCACTTTAGAAGTTGAAGGTTCTGATAATATTGAAAAT 5879615 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||||||||| |||||||| ||| || ||| |||||| | || ||| Sbjct 5879614 GTAAAAGCCAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAACAAAGATTAATTTTC 5879555 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || || |||||||| | ||| | | || || ||| | || || || || Sbjct 5879554 GCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGACTATAACATTCAAAAGGAATCC 5879495 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||| ||| | || || ||| Sbjct 5879494 ACTCTCCACTTGGTATTAAGA 5879474 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| || ||||| ||| ||||||| | | ||| Sbjct 2332536 AAAACTCTCACTGGTAAAACCATCACATTAGAAGTTGAATGTTCTGATAATATTGAAAAT 2332595 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| ||||| || || || || |||||| | || || Sbjct 2332596 GTTAAAGCTAAA-ATCCAAGATAAAGAGGGTATCCCACCAGATCAACAAAGATTAATTTT 2332654 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || || |||||||| | ||| | | ||||| || | || || || || Sbjct 2332655 CGCAGGTAAACAATTAGAAGATGGCCGTACTCTTTCAGATTATAATATTCAAAAGGAATC 2332714 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | || || ||| Sbjct 2332715 TACTCTTCATTTAGTATTAAGA 2332736 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/197 (72%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACA-CAGT 206237 |||| ||| || ||||| || || || || || | ||||| ||| || ||||| || | Sbjct 5640236 TTTGTAAAGACCCTCACCGGTAAGACTATTACACTCGAAGTTGAAGGTAGTGACAACATT 5640295 Query 206238 C-GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 |||| ||||| |||||||||||| |||||||| ||| || || ||| | | Sbjct 5640296 GAGAAT--GTAAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAACAACGTC 5640353 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || ||||| || || || || |||||||| | ||| | | |||||||| |||| | Sbjct 5640354 TCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAATATCCAAA 5640413 Query 206357 AAGAGTCTACTCTTCAC 206373 |||| || ||||| ||| Sbjct 5640414 AAGAATCAACTCTCCAC 5640430 >seq6 Length=3602379 Score = 100 bits (110), Expect = 7e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| || ||||| ||| |||| || | | ||| Sbjct 961050 AAAACTCTCACTGGTAAAACTATCACCTTAGAAGTTGAAGGTTCAGATAATATTGAAAAT 961109 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| ||| || || |||||| | || || Sbjct 961110 GTTAAAGCCAA-GATTCAAGATAAAGAAGGTATTCCCCCAGATCAACAAAGATTAATTTT 961168 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || || |||||||| | ||| | | || || || | || ||||| || Sbjct 961169 CGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCAGACTATAATATTCAAAAAGAATC 961228 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 |||||||| | ||||| ||| Sbjct 961229 AACTCTTCATTTAGTTTTAAGA 961250 Score = 100 bits (110), Expect = 7e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | ||||| ||||| |||||||||||||| ||| |||| || | | ||| Sbjct 961734 AAAACTTTAACAGGTAAAACTATCACTTTGGAAGTTGAAGGTTCAGATAATATTGAAAAT 961793 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| || || || |||||| | || || Sbjct 961794 GTAAAAGCCAAA-ATTCAAGATAAAGAAGGTATCCCACCAGATCAACAAAGATTAATTTT 961852 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || || |||||||| | ||| | | || || || | || ||||| || Sbjct 961853 CGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCAGACTATAATATTCAAAAAGAATC 961912 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 |||||||| | ||||| ||| Sbjct 961913 AACTCTTCATTTAGTTTTAAGA 961934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820179174761