Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 280 2e-70 seq2 140 4e-28 >seq4 Length=5450249 Score = 280 bits (310), Expect = 2e-70 Identities = 1152/1789 (64%), Gaps = 58/1789 (3%) Strand=Plus/Minus Query 68404 GTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTT 68463 ||||| |||||||||||||| || || | |||| ||||| |||||||||||| Sbjct 1505912 GTACGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCATGAGTAGAAATGCATTGAG 1505853 Query 68464 GTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATG 68523 || ||||| | | | |||| || || || || ||| | |||||||||||||||| Sbjct 1505852 GTGAGTTTAGCAAAGGTTGGTTCAGCAATGAAAACATTGAAACTTTGACTTTGATCGATG 1505793 Query 68524 AAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTC 68583 ||||| || | ||| || ||||| | || | | | ||||| | |||||||||| || Sbjct 1505792 AAAGCACCACGATCAGCAGCCATATCGATGAGAGTTCTTTGACGGATTTCCCAAACTGTT 1505733 Query 68584 TTAAAAATCTGTTTGATATCATCTGGAAGGCT--CG-TATTTTGAATGGATCCACCATCG 68640 ||| | | | ||| | |||||| || | || || | ||||||||| |||| | Sbjct 1505732 TTATAGAGTTCTTTCAAATCATCAGGGATGCCACCGATGGATTGAATGGAACCACGTGCA 1505673 Query 68641 GATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCT-CCGTTAAAACTCTAAG 68699 | | ||| |||||| ||||| ||| ||| | | || | | | || || Sbjct 1505672 GCAACGATTTGATTCTTCATCTCTGGTGACCA-AATGCCCAATTCCATGAGATCTTCGAG 1505614 Query 68700 GAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACT 68759 | || || || ||| ||||| || | ||| || | |||| ||||||| || Sbjct 1505613 TAATTGTTTGTTGACAATTGTGAATTCACCTGCTAAAACACGACGACTGTAAATGTTGGA 1505554 Query 68760 GGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCAT 68819 || || ||||| | ||||||| || || || |||||| ||||| || |||||||| Sbjct 1505553 AGTGTAAGGTTCAAAGCATTCATTGTTACCAAGGATTTGACTTGTTGAAGCGGTTGGCAT 1505494 Query 68820 AGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGA---TTTTATCTTTTAGATG 68876 ||||| | | | ||| | | |||| | ||| | ||||| ||||| | Sbjct 1505493 TGGTGCAATGAGGAGTGAATTACGTAAACCACCCTTATTGACAATGTTATCCTTTAGCTC 1505434 Query 68877 TTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTT 68936 | ||||| |||| || | |||| ||||||||| | ||| |||| || || || || Sbjct 1505433 TGCCCAATTCCAACGAGAACTTGGTGTAACATTCCACATATCAAATTGGAGGATACCTTT 1505374 Query 68937 ACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTC-CTGTTCAGCTAGTTCACAAC 68995 || ||| || || | | |||||| | || || | | || || | |||| | Sbjct 1505373 GGAAGCTGGTGAACCTTTGAAAGATTCATAGGTACCATCACGGATC-GCCAATTCATGAG 1505315 Query 68996 TTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTG-CT 69054 || || || | | ||||| |||||| || | ||| | || | | | | Sbjct 1505314 AGGCAGTCAAAGCGGCAAAGTAAATGGTTTCGGCGATTTCAACATTTA-ATTTAGCGGCG 1505256 Query 69055 TCTAGACTATCGAATGG-ATA---ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAAC 69110 | | ||||||||| || ||| || | || ||| | |||| ||||| || |||| Sbjct 1505255 GCAACACTATCGAAAGGCATACGCATTTTAATGAAAA----CATCGGCCAAACCTTGAAT 1505200 Query 69111 CCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATA 69170 |||||||| || || | |||||| ||||||| ||| ||| || | | |||||||| Sbjct 1505199 ACCAATACCAATTGGACGATGTCTAAGATTTGAAGTTTTAGCCTCAGCCACTGGATAATA 1505140 Query 69171 ATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGT-- 69228 ||| ||| || || |||||||| | || || || | || ||| Sbjct 1505139 GTTACGATCGATGATAACGTTAAGATTGACGGTTATTAACTTTGTGATTTCAAATAGGAA 1505080 Query 69229 TTGAG----AAAATCAA----------ATCGT-----CCATCTAT------AACAAACAT 69263 |||| ||| || |||| || || | ||||||| | Sbjct 1505079 TTGATGGTCAAACTCTTTTTCTTTTGGATCGGTTGAGCCTACTTTTTGACGAACAAACTT 1505020 Query 69264 ATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTAT 69323 ||||||| ||| || ||||||||||| || | |||| | || ||||| || Sbjct 1505019 TGGAAGTGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATGTGTATTGAAT 1504960 Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 ||||| ||||| |||||||||| | || || || | ||| | ||||| || Sbjct 1504959 GATCTCGGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTAGC 1504900 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 |||||||| |||||||| | ||| || |||||||||||||||| ||||| || ||||| Sbjct 1504899 ATTACAGGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAGACTCCATAAT 1504840 Query 69444 AGATTTCCAAACGACCCTAGCATTTATTACG-GTCTTGTAACG-CTTCTCTTT-TTCATA 69500 | ||||| | ||| || || || |||||| | | | | || ||| || Sbjct 1504839 GGCGAACCAAAGTTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAGGTGTTGCTTCGTA 1504780 Query 69501 TTGTGTATATAGCCGTTCGAA-TTCATCTCCCCAAACATCATCCAATCCAGGACATTCAT 69559 || ||| || | ||| ||| ||| | ||| | | || || ||||| Sbjct 1504779 TTTCAAATAGAGA-GCACGATGTTCCTCTGAGTGAGTTTCAGCAAGACCTGGTGCTTCAT 1504721 Query 69560 TTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAA 69619 ||||||| | | | ||| | ||| | | || |||| |||||| | ||| || Sbjct 1504720 TTGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTTCCATAAAAATATCACTAA 1504661 Query 69620 TCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttA 69678 ||||||||| ||| || |||||||| | ||| | ||||| || || || ||||| || Sbjct 1504660 CCCAAAGAGC-ATAGAATAGATCTCTAGCTCTCATCTCTTCCTTACCAGTGTTTTTCTTT 1504602 Query 69679 AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCC 69738 ||||| | ||| || | | ||||| ||||||||||| | || | || | | | ||| Sbjct 1504601 AGATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACGGCAAAGGCACCC 1504542 Query 69739 GGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATC 69798 || || || || ||||| | ||| | ||||| | ||| | || | ||||| Sbjct 1504541 TTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATT 1504482 Query 69799 GGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATA 69858 || | | |||||| | ||||||| || ||| |||||||||| || ||||| Sbjct 1504481 GGCACCAAACCATTGCTTGTACCATTGGTACCACGAATATAACTTTGAGCAGCACGAATC 1504422 Query 69859 TTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAAT 69918 ||| || | | ||| || || || || | || || || || ||||| ||||||| Sbjct 1504421 TTATGAACTGCAATACCAATACCACCGGCACTCTTTGAAATGAGTGCACATTGTTTCAAA 1504362 Query 69919 GTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAG-AAGAAAACAGCTAGACAT 69977 |||||||| ||||| || || ||| || |||| | || |||||| || | ||||| Sbjct 1504361 GTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACAAGAT-GACAT 1504303 Query 69978 TTGATGATG-TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTT 70036 ||| || || | || || || || |||| || || | || ||||||||| |||| | Sbjct 1504302 TTG-TGGTGATGGTGTACCTGCGTTGAATAGAGTTGGTGTGGCATGAGTGAACAATTTCT 1504244 Query 70037 CAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCG 70096 |||| | | ||||| || | || || ||||| | || ||| || || || | Sbjct 1504243 CAGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCCATGGATACCAATGG 1504184 Query 70097 CGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 ||||||||||||||| || || || || || || ||||| ||| || Sbjct 1504183 AGACACGCATCAACATGTGTTGTGGACGCTCGACAATTTTACCATTGAT 1504135 >seq2 Length=8484197 Score = 140 bits (154), Expect = 4e-28 Identities = 208/294 (71%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||| |||||||||| || || || | ||||||||| || |||||||| | Sbjct 2356843 CATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAAA 2356784 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || |||||| ||| | |||||| | ||||||||| | | |||| |||| || || Sbjct 2356783 CCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAAT 2356724 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC---ATTATGT 39793 || || || ||||||||||||||||| | | ||| | | || ||| || || | Sbjct 2356723 ATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC---AAATGAATCTGAATCATTT 2356667 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| | |||||| || || ||||| || | ||| || |||||||| || |||||| Sbjct 2356666 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 2356607 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 || | | || ||| | ||||||||| ||| || || ||||| |||||| Sbjct 2356606 AATAATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 140 bits (154), Expect = 4e-28 Identities = 208/294 (71%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||| |||||||||| || || || | ||||||||| || |||||||| | Sbjct 3674943 CATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAAA 3675002 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || |||||| ||| | |||||| | ||||||||| | | |||| |||| || || Sbjct 3675003 CCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAAT 3675062 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC---ATTATGT 39793 || || || ||||||||||||||||| | | ||| | | || ||| || || | Sbjct 3675063 ATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC---AAATGAATCTGAATCATTT 3675119 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| | |||||| || || ||||| || | ||| || |||||||| || |||||| Sbjct 3675120 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 3675179 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 || | | || ||| | ||||||||| ||| || || ||||| |||||| Sbjct 3675180 AATAATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 120 bits (132), Expect = 4e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 ||||| |||| ||||| || |||||||| || || ||||| || || |||||||||||| Sbjct 2356428 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 2356369 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 || | ||||||||| || || |||||| || | |||||||| || || |||||| Sbjct 2356368 TCTGGAATTTGTACTTCAGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCA 2356309 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 || |||||||||||||| |||||| || |||| ||||| ||| |||||| Sbjct 2356308 GATGCAGCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATTTA 2356249 Query 40085 T 40085 | Sbjct 2356248 T 2356248 Score = 120 bits (132), Expect = 4e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 ||||| |||| ||||| || |||||||| || || ||||| || || |||||||||||| Sbjct 3675358 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 3675417 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 || | ||||||||| || || |||||| || | |||||||| || || |||||| Sbjct 3675418 TCTGGAATTTGTACTTCAGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCA 3675477 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 || |||||||||||||| |||||| || |||| ||||| ||| |||||| Sbjct 3675478 GATGCAGCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATTTA 3675537 Query 40085 T 40085 | Sbjct 3675538 T 3675538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908447959240