Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq6 116 8e-21 >seq6 Length=3602379 Score = 116 bits (128), Expect = 8e-21 Identities = 332/494 (67%), Gaps = 21/494 (4%) Strand=Plus/Minus Query 332025 AAACGACGAGTTAATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTT 332084 |||||||| ||||| ||| || |||| | || |||||||||||| ||||||| Sbjct 117175 AAACGACGTTCAAATGCTGGATCCTTTTCGACGTATTGACGATATTCATCCAATGTTGTA 117116 Query 332085 GCACCAATTACACGAATCTCACCACGTGAAAGTGCTGGCTT-AAGCATATTGCT-CATGT 332142 |||||||| ||||| ||||| | || | ||| || || | |||| ||| Sbjct 117115 GCACCAATACAACGAAGTTCACCTCTTGCCAACATTGGTTTCAATAAGTTTGCAGCAT-- 117058 Query 332143 CCATAGAACCATTACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAA 332202 |||| | ||||| || |||||| || | | | ||| |||||||||||||| | Sbjct 117057 CCATTGCACCATCGGTTTT---ACCAGCACCCAATACCAAATGGATTTCATCAATGAATA 117001 Query 332203 CAATAGTATTTTCACGTT--TCTTTAG-TTCTTTTAGCAAATTGTCGATGCGTTCTTCAA 332259 ||| || || | |||||| |||||| || | | | | |||||||||| Sbjct 117000 AAATGATACCACCATTTGAATCTTTAACTTCTTTAAGTACAGCTTTTAAACGTTCTTCAA 116941 Query 332260 ATTCACCACGATACTTAGTACCAGCAGTCAATGCACCAACATTTAGTGAAAGAATTTCAA 332319 | |||||||||||||| | ||| ||| | |||||||| | || | || | || | Sbjct 116940 AATCACCACGATACTTTGCACCGGCAATTAATGCACCCATATCCAATGCTATAA----CA 116885 Query 332320 CGT-CTTTCAGGTGTTCAGGTACGTTACCATCAGCAATAGCTTGTGCAAGCCCGTCGATG 332378 ||| | |||| | ||||| | | |||| ||||| |||||| | || || | Sbjct 116884 CGTGCATTCAAATTATCAGGAATATCACCACGTACAATACGTTGTGCTAAACCTTCAACA 116825 Query 332379 ATTTGTGTTTTACCTACACCAGCTTCACCAGTGAGAATAGCATTCTTTTTGGTTTTGCGA 332438 | | |||||||| ||||||| ||||||| | | || | ||| ||||||||| | | Sbjct 116824 ACTGCAGTTTTACCAACACCAGGTTCACCAATCAAAACTGGATTGTTTTTGGTTCTTCTG 116765 Query 332439 GCAAG-AGTCTCAATCAATGCAGAC-AAT-TCTTTCTGGCGACCAATCATAGGATCTAGT 332495 | ||| | ||| ||| || | ||| ||| |||| | | |||||| | |||||||| | Sbjct 116764 GAAAGTACTCT-AAT-AACAC-GACGAATCTCTTCATCTCTACCAATTACAGGATCTAAT 116708 Query 332496 TTGCCTTCTTTTGC 332509 || || |||| ||| Sbjct 116707 TTACCCTCTTGTGC 116694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113829814890968