Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 140 3e-28 >seq2 Length=8484197 Score = 140 bits (154), Expect = 3e-28 Identities = 210/295 (71%), Gaps = 10/295 (3%) Strand=Plus/Plus Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCG 44050 |||||| | || || || || || |||||| ||| || || ||| |||||||| Sbjct 2356554 AGTCTTTTAATTGAAACTTATATTAAAGATAAGCAAACTAAAGATAAATTATTTAATGCA 2356613 Query 44051 ATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT--- 44107 || |||||| | || |||||| | || ||||| ||||| | | |||||||||| Sbjct 2356614 ATTGAAACAATTCCATGTATTAAAAAGAAGGCAGAATGGGCATTAAGATGGATAAATGAT 2356673 Query 44108 TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTT 44167 ||| ||||| |||| |||||| | || || ||||||| || || || || || || Sbjct 2356674 TCA---GATTCATTTGCAGAACGTTTGGTTGCATTTGCAGCAGTTGAGGGTATATT--TT 2356728 Query 44168 TCAG--GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGA 44225 |||| || ||| | ||||||||||| || || ||||||| |||| || || | Sbjct 2356729 TCAGTGGAAGTTTTTGTTCAATATTTTGGTTGAAAAAGAGAGGTTTAATGCAAGGTTTAA 2356788 Query 44226 CGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | ||||||||||| ||||| ||||| ||||| |||||||| ||||| || || Sbjct 2356789 CATTTTCAAATGAATTAATTTCACGTGACGAAGGTTTACATTGTGATTTCGCATG 2356843 Score = 140 bits (154), Expect = 3e-28 Identities = 210/295 (71%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCG 44050 |||||| | || || || || || |||||| ||| || || ||| |||||||| Sbjct 3675232 AGTCTTTTAATTGAAACTTATATTAAAGATAAGCAAACTAAAGATAAATTATTTAATGCA 3675173 Query 44051 ATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT--- 44107 || |||||| | || |||||| | || ||||| ||||| | | |||||||||| Sbjct 3675172 ATTGAAACAATTCCATGTATTAAAAAGAAGGCAGAATGGGCATTAAGATGGATAAATGAT 3675113 Query 44108 TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTT 44167 ||| ||||| |||| |||||| | || || ||||||| || || || || || || Sbjct 3675112 TCA---GATTCATTTGCAGAACGTTTGGTTGCATTTGCAGCAGTTGAGGGTATATT--TT 3675058 Query 44168 TCAG--GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGA 44225 |||| || ||| | ||||||||||| || || ||||||| |||| || || | Sbjct 3675057 TCAGTGGAAGTTTTTGTTCAATATTTTGGTTGAAAAAGAGAGGTTTAATGCAAGGTTTAA 3674998 Query 44226 CGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | ||||||||||| ||||| ||||| ||||| |||||||| ||||| || || Sbjct 3674997 CATTTTCAAATGAATTAATTTCACGTGACGAAGGTTTACATTGTGATTTCGCATG 3674943 Score = 102 bits (112), Expect = 6e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 |||||||| ||||||||||| || || || || |||||||| | | | | | ||| Sbjct 2356286 GTTTTGGCATTTTTTGCTGCATCTGATGGTATTGTAAATGAAAACCTTGCAACTAGATTT 2356345 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | ||||| ||| | ||||||||| ||||||| ||||| ||||||||||| || ||| Sbjct 2356346 ATGTCTGAAGTACAAATTCCAGAAGCAAGATGTTTCTATGGTTTTCAAATTGCAATTGAA 2356405 Query 43970 AATATTCATTCGGAAA 43985 ||||| ||||| |||| Sbjct 2356406 AATATACATTCTGAAA 2356421 Score = 102 bits (112), Expect = 6e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 |||||||| ||||||||||| || || || || |||||||| | | | | | ||| Sbjct 3675500 GTTTTGGCATTTTTTGCTGCATCTGATGGTATTGTAAATGAAAACCTTGCAACTAGATTT 3675441 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | ||||| ||| | ||||||||| ||||||| ||||| ||||||||||| || ||| Sbjct 3675440 ATGTCTGAAGTACAAATTCCAGAAGCAAGATGTTTCTATGGTTTTCAAATTGCAATTGAA 3675381 Query 43970 AATATTCATTCGGAAA 43985 ||||| ||||| |||| Sbjct 3675380 AATATACATTCTGAAA 3675365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455801396205