Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 224 1e-53 seq3 91.5 2e-13 >seq4 Length=5450249 Score = 224 bits (248), Expect = 1e-53 Identities = 1121/1764 (64%), Gaps = 56/1764 (3%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 || ||||||||||| || ||||| | |||| ||||||| ||| | |||||| || | | Sbjct 1505909 CGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCATGAGTAGAAATGCATTGAGGTG 1505850 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 || || | | ||||| | ||||| | || | |||||||||||| || ||||| Sbjct 1505849 AGTTTAGCAAAGGTTGGTTCAGCAATGAAAACATTGAAACTTTGACTTTGATCGATGAAA 1505790 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTAATTTCCCAAACTGTGCG 110541 || || | || |||||||| |||| | | ||| | | ||||||||||||| Sbjct 1505789 GCACCACGATCAGCAGCCATATCGATGAGAGTTCTTTGACGGA-TTTCCCAAACTGTTTT 1505731 Query 110542 ATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTT 110601 |||||| | || | |||||| ||||| | ||| || |||||||| | || Sbjct 1505730 ATAGAGTTCTTTCAAATCATCAGGGATGCCACCGATGGATTGAATGGAACCACGTGCAGC 1505671 Query 110602 CACCATGAGATCCTTCATATCCTTGGACCAGA-GACCAATCTTCTTGAGGTCATTGACGA 110660 || || ||| |||||| || ||||| | | ||||| | | |||| || | || | Sbjct 1505670 AACGATTTGATTCTTCATCTCTGGTGACCAAATGCCCAAT-TCCATGAGATCTTCGAGTA 1505612 Query 110661 GGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720 || ||||||||||| || |||||||| | | | ||| ||||| | | Sbjct 1505611 ATTGTTTGTTGACAATTGTGAATTCACCTGCTAAAACACGACGACTGTAAATGTTGGAAG 1505552 Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTG 110780 |||| ||||||||||||||||| ||||| | |||||| || || || |||||||||| Sbjct 1505551 TGTAAGGTTCAAAGCATTCATTGTTACCAAGGATTTGACTTGTTGAAGCGGTTGGCATTG 1505492 Query 110781 GTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG---ATGCGTTCCTTGAGAACAT 110837 |||| || | || ||||| | ||| || ||| ||| ||||| || | Sbjct 1505491 GTGCAATGAGGAGTGAATTACGTAAACCACCCTTATTGACAATGTTATCCTTTAGCTCTG 1505432 Query 110838 CCC-AGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGG 110896 ||| | || | || |||||| | || || |||||| ||||| || || | |||| | Sbjct 1505431 CCCAATTCCAACGAGAACTTGGTGTAACATT-CCACATATCAAATTGGAGGATACCTTTG 1505373 Query 110897 GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACC-TTGGGCTTCAGCCAATTCACAGCT 110955 || || || ||||| | || | |||||||| ||| | | || ||||||||| Sbjct 1505372 GAAGCTGGTGAACCTTTGAAAGATTCATAGGTACCATCACGGATC-GCCAATTCATGAGA 1505314 Query 110956 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 111015 || || | || || |||||||| ||| | |||| | | ||| | Sbjct 1505313 GGCAGTCAAAGCGGCAAAGTAAATGGTTTCGGCGATTTCAACATTTAATTTAGCGGCGGC 1505254 Query 111016 ATCTGAATC-AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCA 111074 | | ||| ||| || || || ||| || ||||| || | |||||||| ||| | Sbjct 1505253 AACACTATCGAAAGGCATA-CGCATTTTAATGAAAACATCGGCCAAACCTTGAATACCAA 1505195 Query 111075 AACCAATAGGTCTGTGTCGCATATTAGA--CTTTCG-CGCAGTCTCAACGGGATAAAAAT 111131 |||||| || | |||| | ||| || ||| | | ||| | || |||||| | | Sbjct 1505194 TACCAATTGGACGATGTCTAAGATTTGAAGTTTTAGCCTCAG---CCACTGGATAATAGT 1505138 Query 111132 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 111191 | | || |||| ||| ||||| ||| | | ||||||||||||| || || Sbjct 1505137 TACGATCGATGATAACGTTAAGATTGACGGTTATTAACTTTGTGATTTCAAATAGGAATT 1505078 Query 111192 CATAATCAAA-----------------AGTGCGAGTCTCTTCATTG----ACATACTTTG 111230 || ||||| | ||| || | ||| ||| |||||| Sbjct 1505077 GATGGTCAAACTCTTTTTCTTTTGGATCGGTTGAGCCTACTTTTTGACGAACAAACTTTG 1505018 Query 111231 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 111290 |||| || || || || | ||| ||||| || | ||||| |||||| | | | Sbjct 1505017 GAAGTGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATGTGTATTGAATGA 1504958 Query 111291 TTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGT 111350 | || ||||| | || ||| |||| || || ||||||||||| || || | Sbjct 1504957 TCTCGGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTAGCAT 1504898 Query 111351 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAG 111410 | || ||||||||||| | ||| | || || || || || || || | | ||| | Sbjct 1504897 TACAGGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAGACTCCATAATGG 1504838 Query 111411 CCTTCCAAACATCGGCGGCTGGTACAATG----GCGTTGGCCCGTC--CCTCCGCCTCGT 111464 | ||||| || || | |||| | |||| ||| || |||| Sbjct 1504837 CGAACCAAAGTTCTTGAGC---TTTAATGACACGTCTTGGGAGGTCAGGTGTTGCTTCGT 1504781 Query 111465 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 111524 | || ||||| || | ||||| | || | ||||||||||| | | Sbjct 1504780 ATTTCAAATAGAGAGCACGATGTTCCTCTGAGTGAGTTTCAGCAAGACCTGGTGCTTCAT 1504721 Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 |||||| || || | ||| | ||| || || || || | ||| |||| || || Sbjct 1504720 TTGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTTCCATAAAAATATCACTAA 1504661 Query 111585 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644 ||| || | | || ||||||||| | |||||| | ||| ||| || Sbjct 1504660 CCCAAAGAGCATAGAATAGATCTCTAGCTCTCATCTCTTCCTTACCAGTGTTTTTCTTTA 1504601 Query 111645 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 111704 |||| || || | || ||| ||||||||||| || | || || || | | |||| Sbjct 1504600 GATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACGGCAAAGGCACCCT 1504541 Query 111705 TTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 ||| | ||| |||||| || || || || || | || || || |||||||||| Sbjct 1504540 TTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATTG 1504481 Query 111762 GAATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 111820 | | | ||||| || ||| |||||| || || |||||| | || | || | | Sbjct 1504480 GCACCAAACCAT-TGCTTGTACCATTGGTACCACGAATATAACTTTGAGCAGCACGAATC 1504422 Query 111821 TCATGGATGTGC-ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 111879 | || || ||| || |||||||| || || | |||||| || | ||||| | | | Sbjct 1504421 TTAT-GAACTGCAATACCAATACCACCGGCACTCTTTGAAATGAGTGCACATTGTTTCAA 1504363 Query 111880 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 111939 ||| |||| ||||| | |||||| |||||||| | | | ||| ||| ||||| Sbjct 1504362 AGTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACAAGATGACAT 1504303 Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 || ||| ||||||||| || ||||| || |||||||| || ||| |||||| | Sbjct 1504302 TTGTGGTGATGGTGTACCTGCGTTGAATAGAGTTGGTGTGGCATGAGTGAACAATTTCTC 1504243 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||| | ||| || | | | |||| || | |||||| || ||||| || || | Sbjct 1504242 AGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCCATGGATACCAATGGA 1504183 Query 112060 GACCCGCATGAACATGTACTGTGG 112083 ||| ||||| ||||||| ||||| Sbjct 1504182 GACACGCATCAACATGTGTTGTGG 1504159 Score = 114 bits (126), Expect = 2e-20 Identities = 267/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 9162 TATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGGAG 9221 |||||||| || |||| || | | |||||| ||| | ||| |||||| ||| Sbjct 2062605 TATCAAGCTTCAACCTCTGAATTATATGGTAAAGTTCAAGAGATTCCACAATCAGAGACC 2062546 Query 9222 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTC 9281 ||||| ||||| ||||| || |||| ||| ||||| || ||||| |||| Sbjct 2062545 ACACCATTCTATCCACGTTCACCATACGCTGTCGCAAAGCAATATGCCTATTGGATCGTT 2062486 Query 9282 AAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAA 9341 ||| || || ||| |||||| ||| ||| || || ||| | ||||| |||||| Sbjct 2062485 GTAAACTATCGTGAGGCTTACGATATGTATGCATGTAATGGTATCTTATTCAATCATGAA 2062426 Query 9342 TCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAGG-GTATCAAACAAA 9399 ||||| | ||||| || ||||| || | ||||| || || || | | Sbjct 2062425 TCACCACGTAGAGGTCCAACTTTTGTAACTAGAAAGATCACTCGTTTCGTTGCTGGTATT 2062366 Query 9400 TCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGG 9459 |||| || || | | | ||| | | |||||||| || ||||| | | ||||||| Sbjct 2062365 GCATGT-GGTAGAGATGAAATTCTCT-ACTTGGGTAATATCAACGCTAAACGTGATTGGG 2062308 Query 9460 GTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GAC 9518 ||||||| | || || |||||||| |||||| | ||| | |||||||| |||||| || Sbjct 2062307 GTCACGCTAGAGATTACGTTGAAGCAATGTGGTTAATGTTACAACAAGA-GAAGCCAGAA 2062249 Query 9519 GAATATGTAGTAGCAACGGGTGAGACCCATTCAGT 9553 || | || | || || ||||| || |||||||| Sbjct 2062248 GATTTCGTTATTGCCACTGGTGAAACTCATTCAGT 2062214 Score = 113 bits (124), Expect = 6e-20 Identities = 260/387 (67%), Gaps = 15/387 (4%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTG---C 11595 ||| |||||||| || | |||||||| | ||| | || | |||||||| | | Sbjct 1752721 AAAACCATCCATTTCAACCAACAATTGATTTAATGTATTCTCACGTTCATCATTCGAACC 1752780 Query 11596 TGGCATACCACCAGCACTGCGTTGCT-TGCCCACCGCATCAATCTCATCAATGAAGACAA 11654 | | |||||| || | ||||| | || || |||||||| ||||| ||||| |||| Sbjct 1752781 AGAGAAACCACCTTTACCTC-TTGCTCTACCAACTGCATCAATTTCATCGATGAATACAA 1752839 Query 11655 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 |||||||| ||| | | || |||||| ||||| | ||| | | | ||| |||| Sbjct 1752840 TACATGGTGCATTCTTTCTAGCCTGTTCAAATAGATCTCTAACACGTGATGGACCAACAC 1752899 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACT----GGAT-GAATGGGACATTTGA 11769 ||||||||||||| || || | || | |||| | || |||||| ||||||| Sbjct 1752900 CAACAAACATCTCTACGAAATCTG-----AACCACTTGTAGAATAGAATGGTACATTTGC 1752954 Query 11770 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAG 11829 |||||| ||| | ||| || | | || || || |||||||| ||| | | || Sbjct 1752955 TTCACCAGCGGTTGCTTTAGCAATCAAAGTTTTACCAGTACCTGGTGGACCAACTAAAAT 1753014 Query 11830 GGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATC 11889 || |||| || ||||| |||||| | || || ||| || | ||| | ||| | Sbjct 1753015 AGCACCTCTTGGTATCTTTGCACCAATGTCATGGAATTTCTTTGGATTCTTTAAAAAGTT 1753074 Query 11890 CACAATCTCTTCAAGTTCATCTTTGGC 11916 |||| ||||||| ||| |||| || Sbjct 1753075 TACAAATTCTTCAATCTCAACTTTAGC 1753101 >seq3 Length=6357299 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 27866 CCAACAAATCCATATTCAGCATCAAAAGCGGCGGCCGAAATGATAGTCCGTTCATAT-AT 27924 ||||| ||||||||||||||| ||||| | || ||| |||| | |||||| || Sbjct 2091362 CCAACTAATCCATATTCAGCAAGTAAAGCAGGTGCAGAACATTTAGTTCAATCATATTAT 2091303 Query 27925 AGAATCATTTGATATGAATATCAAAATAATTCGCTGTAATAATGTTTATGGTCCAAATCA 27984 | |||||||| | | | | | ||||| | | ||||||| ||||||||||||| || Sbjct 2091302 A-AATCATTTAAATTACCTGTTATAATAACTAGAGCTAATAATATTTATGGTCCAAAGCA 2091244 Query 27985 ATACCCGGAGAAACTCATTCCAAAGTTTATAA 28016 ||| || || ||| | |||||||| ||||||| Sbjct 2091243 ATATCCTGAAAAAATTATTCCAAAATTTATAA 2091212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031678133600