Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4 257 2e-63 seq1 87.8 2e-12 >seq4 Length=5450249 Score = 257 bits (284), Expect = 2e-63 Identities = 1129/1764 (64%), Gaps = 56/1764 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| ||||||| ||||| || |||| ||||| ||||| |||||| | || |||| | Sbjct 1504159 CCACAACACATGTTGATGCGTGTCTCCATTGGTATCCATGGCGAAGACCTCGAATCTGCC 1504218 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | | || ||| | |||| | |||||| ||| || |||||||| || ||| Sbjct 1504219 ATCAACACCTACAAACGTTTGTCTGAGAAATTGTTCACTCATGCCACACCAACTCTATTC 1504278 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || ||||||||| ||| |||||||| ||| ||| | | | |||||||| Sbjct 1504279 AACGCAGGTACACCATCACCACAAATGTCATCTTGTTTCTTGGTTCAAATGAAGGAGGAT 1504338 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 |||||| | ||||| |||| ||| | | | ||||| | || |||||| | || || Sbjct 1504339 TCAATCGATGGTATTTATGACACTTTGAAACAATGTGCACTCATTTCAAAGAGTGCCGGT 1504398 Query 104462 GGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 |||||||| || ||| || || | | | || | || | |||||| || || || Sbjct 1504399 GGTATTGGTATTGCAGTTC-ATAAGATTCGTGCTGCTCAAAGTTATATTCGTGGTACCAA 1504457 Query 104521 TGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 |||| ||| || ||||| | | ||||||||||| || || || | || || || || | Sbjct 1504458 TGGTACAAGCA-ATGGTTTGGTGCCAATGCTTCGTGTTTTCAATGATACTGCTCGTTACG 1504516 Query 104580 TAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | |||||| || ||| ||||||| | | || || || | || |||||||||| Sbjct 1504517 TCGATCAAGGTGGTGGCAAGAGAAAGGGTGCCTTTGCCGTTTACTTGGAACCATGGCACG 1504576 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 | ||| || | || || |||| | ||| ||| | || ||| | | Sbjct 1504577 CTGATGTCTTTGAATTTATTGATCTAAAGAAAAACACTGGTAAGGAAGAGATGAGAGCTA 1504636 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 | ||||| |||| ||||| ||| || ||| | || ||| | | || || | | || Sbjct 1504637 GAGATCTATTCTATGCTCTTTGGGTTAGTGATATTTTTATGGAACGTGTCGAACAAAATG 1504696 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGG 104816 || ||||| | |||||||||||| | | ||||| ||||| | || | |||| Sbjct 1504697 GCGATTGGGCCCTCTTTTGTCCAAATGAAGCACCAGGTCTTGCTGAAACTCACTCAGAGG 1504756 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCC-- 104874 | | || || || || ||||| | | | | | | | ||| ||| | Sbjct 1504757 AACATCGTGCTCTCTATTTGAAATACGAAGCAACACCT-GACCTCCCAAGAC-GTGTCAT 1504814 Query 104875 ---AGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 |||| || | ||| || ||| | |||||||| || |||||||| |||| Sbjct 1504815 TAAAGCTCAAGAACTTTGGTTCGCCATTATGGAGTCTCAAGTTGAAACTGGTACTCCATT 1504874 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 ||| | ||||| || |||||||| || |||||||||||||| ||| || | Sbjct 1504875 CATTTTGTACAAGGATGCCTGTAATGCTAAATCCAATCAAAAGAATTTAGGTACCATTAG 1504934 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 ||| ||||| ||||| || ||| | ||| ||| |||||| | || || || Sbjct 1504935 TAGTAGTAATCTTTGTACCGAGATCATTCAATACACATCACCAGATGAAATCGCCGTTTG 1504994 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGT---------------------GGATCC 105090 ||| || || || || || || || |||| ||| ||||| Sbjct 1504995 TAATCTTGCCTCTATAGCACTTCCAAAGTTTGTTCGTCAAAAAGTAGGCTCAACCGATCC 1505054 Query 105091 -AGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAA 105149 | ||| ||||| ||||| || || || ||| | || || | ||| | Sbjct 1505055 AAAAGAAAAAGA-GTTTGACCATCAATTCCTATTTGAAATCACAAAGTTAATAACCGTCA 1505113 Query 105150 ACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTA 105206 | || ||| | || ||| | || | ||| || || |||| ||| | || | Sbjct 1505114 ATCTTAACGTTATCATCGATCGTAACTATTATCCAGTGGCTGAG---GCTAAAACTTCAA 1505170 Query 105207 ATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTT 105266 || | ||||| |||||||||||| | ||| |||| ||| | || ||||| |||||| Sbjct 1505171 ATCTTAGACATCGTCCAATTGGTATTGGTATTCAAGGTTTGGCCGATGTTTTCATTAAAA 1505230 Query 105267 GTCGCCACGCATTT-GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACC 105325 || | || ||| ||| | | || || | |||| || || ||| Sbjct 1505231 TGCG-TATGCCTTTCGATAGTGTTGCCGCCGCTAAATTAAATGTTGAAATCGCCGAAACC 1505289 Query 105326 ATGTATCACGCCGCTCTTGA-GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGA 105384 || || |||||| |||| || | || ||||| ||||||| | ||||| Sbjct 1505290 ATTTACTTTGCCGCT-TTGACTGCCTCTCATGAATTGGCGATCCGTGATGGTACCTATGA 1505348 Query 105385 AACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA 105444 | | || | ||||| |||||||| |||| | || ||||||||||||| |||| || | Sbjct 1505349 ATCTTTCAAAGGTTCACCAGCTTCCAAAGGTATCCTCCAATTTGATATGT-GGAATGTTA 1505407 Query 105445 GACCAAGCT-TCACTACGACTGGGAAGCTCTCAAGGAACGCA---TCAAGGAGAAGGGTC 105500 |||||| | || | | |||| || || ||||| || |||| || ||| Sbjct 1505408 CACCAAGTTCTCGTTGGAATTGGGCAGAGCTAAAGGATAACATTGTCAATAAGGGTGGTT 1505467 Query 105501 TTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 105560 | ||||| |||||||| || ||||||||||| || || || |||||| | |||| Sbjct 1505468 TACGTAATTCACTCCTCATTGCACCAATGCCAACCGCTTCAACAAGTCAAATCCTTGGTA 1505527 Query 105561 ATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAG 105620 | ||||||||||||||||| ||||| | ||||| || | | | || || | Sbjct 1505528 ACAATGAATGCTTTGAACCTTACACTTCCAACATTTACAGTCGTCGTGTTTTAGCAGGTG 1505587 Query 105621 AGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTC-TCTGGTCC 105679 | || ||||||||||| || | | || || |||| || ||||| | | ||||| Sbjct 1505588 AATTCACAATTGTCAACAAACAATTACTCGAAGATCTCATGGA-ATTGGGCATTTGGTCA 1505646 Query 105680 AAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATT 105739 || |||||| ||| || || || |||||||||||||| || | | || Sbjct 1505647 CCAGAGATGAAGAATCAAATCGTTGCTGCACGTGGTTCCATTCAATCCATCGGTGGCATC 1505706 Query 105740 CCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA-TGTCAT 105798 || |||| | || | | || ||||||||||||||| | ||| | | |||| Sbjct 1505707 CCTGATGATTTGAAAGAACTCTATAAAACAGTTTGGGAAATC-CGTCAAAGAACTCTCAT 1505765 Query 105799 TGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCAT 105858 || ||||| || ||||||||| ||||| ||||||||||||||| | ||| | ||||| Sbjct 1505766 CGATATGGCTGCTGATCGTGGTGCTTTCATCGATCAAAGTCAAAGTTTCAATGTTTTCAT 1505825 Query 105859 GGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCT 105918 | ||||| | | || ||| | || ||||| | ||| |||||||| ||| | Sbjct 1505826 TGCTGAACCAACCTTTGCTAAACTCACCTCAATGCATTTCTACTCATGGAAGAAAGGTTT 1505885 Query 105919 CAAAACGGGGATGTATTACCTCCG 105942 || || || ||||| || || || Sbjct 1505886 AAAGACTGGTATGTACTATCTTCG 1505909 Score = 122 bits (134), Expect = 1e-22 Identities = 311/465 (67%), Gaps = 15/465 (3%) Strand=Plus/Plus Query 9562 GATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTA--TCAAAACCA 9619 ||||||| | ||| || || |||| ||||||| | | |||| | | ||||||| Sbjct 1752670 GATATCAGGTCTATTGGTTGCAGCGAGTACAACAACA--TTCTTCAATGGTTTAAAACCA 1752727 Query 9620 TCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG---CTGGCATA 9676 ||||| || ||| | ||| || | || | || ||||||||||||| | | | | Sbjct 1752728 TCCATTTCAACCAACAATTGATTTAATGTATTCTCACGTTCATCATTCGAACCAGAGAAA 1752787 Query 9677 CCACCAGCACTGCGTTGCTTTCCCA-CGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 ||||| || | ||||| | ||| | |||||||| ||||| ||||| || || ||||| Sbjct 1752788 CCACCTTTACCTC-TTGCTCTACCAACTGCATCAATTTCATCGATGAATACAATACATGG 1752846 Query 9736 TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 9795 | ||| | | ||| |||||| ||||| | ||||| | || ||||||||||| Sbjct 1752847 TGCATTCTTTCTAGCCTGTTCAAATAGATCTCTAACACGTGATGGACCAACACCAACAAA 1752906 Query 9796 CATCTCCACAAAGTTTGCGGCGGAACAT-TGGA--TGAAGGGGACATTAGATTCACCCGC 9852 |||||| || || | || | || | | || ||| || ||||| | |||||| || Sbjct 1752907 CATCTCTACGAAATCTGAACC---ACTTGTAGAATAGAATGGTACATTTGCTTCACCAGC 1752963 Query 9853 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCG 9912 | ||| || | | ||| ||||| |||||||| ||| | | | ||||||| Sbjct 1752964 GGTTGCTTTAGCAATCAAAGTTTTACCAGTACCTGGTGGACCAACTAAAATAGCACCTCT 1753023 Query 9913 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 ||| ||||| || ||| | || | || ||| || | ||| | ||| | |||| ||| Sbjct 1753024 TGGTATCTTTGCACCAATGTCATGGAATTTCTTTGGATTCTTTAAAAAGTTTACAAATTC 1753083 Query 9973 TTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 10017 ||| | ||| |||| || | ||| || | |||||| |||| Sbjct 1753084 TTCAATCTCAACTTTAGCTTCACCAAGACCTGCTACATCGCTAAA 1753128 Score = 114 bits (126), Expect = 2e-20 Identities = 267/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 7238 TACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAG 7297 || ||||| ||||| || || | | ||||||||| | ||| | ||||||| ||| Sbjct 2062605 TATCAAGCTTCAACCTCTGAATTATATGGTAAAGTTCAAGAGATTCCACAATCAGAGACC 2062546 Query 7298 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTC 7357 ||||| ||||| ||||| || |||| ||| ||||| || ||||| |||| Sbjct 2062545 ACACCATTCTATCCACGTTCACCATACGCTGTCGCAAAGCAATATGCCTATTGGATCGTT 2062486 Query 7358 AAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAA 7417 ||| || || ||| |||||| ||| ||| || || ||| | ||||| |||||| Sbjct 2062485 GTAAACTATCGTGAGGCTTACGATATGTATGCATGTAATGGTATCTTATTCAATCATGAA 2062426 Query 7418 TCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CG-AGGGTATCAAACAAA 7475 ||||| | ||||| || ||||| || | ||||| || || || | | Sbjct 2062425 TCACCACGTAGAGGTCCAACTTTTGTAACTAGAAAGATCACTCGTTTCGTTGCTGGTATT 2062366 Query 7476 TCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGATTGGG 7535 |||| || || | | | ||| | | |||||||| || ||||| | ||||||| Sbjct 2062365 GCATG-TGGTAGAGATGAAATTC-TCTACTTGGGTAATATCAACGCTAAACGTGATTGGG 2062308 Query 7536 GTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GAC 7594 ||||||| | || || |||||||| |||||| | ||| | |||||||| |||||| || Sbjct 2062307 GTCACGCTAGAGATTACGTTGAAGCAATGTGGTTAATGTTACAACAAGA-GAAGCCAGAA 2062249 Query 7595 GAATATGTAGTAGCAACGGGTGAGACCCATACAGT 7629 || | || | || || ||||| || ||| |||| Sbjct 2062248 GATTTCGTTATTGCCACTGGTGAAACTCATTCAGT 2062214 >seq1 Length=4923596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 9757 || |||| |||||| ||||||||||| ||||| |||||| ||| | | ||| | ||| Sbjct 216608 CCAACGGAATCAATTTCATCAATGAATACGATACATGGTGAATTCTTTCTTGCGGCCTCA 216667 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 9795 ||||| || |||||||| || || || ||||||||||| Sbjct 216668 AAGAGTTCACGTACACGTTTTGCACCAACACCAACAAA 216705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260501078840