Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1 127 1e-24 seq3 100 1e-16 >seq1 Length=4923596 Score = 127 bits (140), Expect = 1e-24 Identities = 166/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 65112 TTAATAAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCAT 65171 |||| | ||| ||||| |||||||| | ||| | |||||||| || | || | | || Sbjct 4833733 TTAAAAGATTGATATTATTTGAACCGACAAACTCTTGAGCCATACCAACGATGGTAGAAT 4833792 Query 65172 TTAAACTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAG 65231 |||||| |||||||| ||||||||| | |||||||||||||| || ||| | ||||||| Sbjct 4833793 ATAAACTTGCTTCACCATGATGATATGCAGAATGTTCAGAGACGTAACCAATCAATTGAG 4833852 Query 65232 CAACTTTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCGTAAAC 65291 | ||||| ||||| | ||| ||| | || || |||||| | | |||| | || Sbjct 4833853 CTACTTTGATTTCTTTCTTTAGATTTCTCTTGAAACAAGAATAGAGTGTTTTTC-TATGT 4833911 Query 65292 TAA-TTTTCAATCCATCCATTAAATTAGGAATGCTTCTGTCACAATC 65337 || |||| || ||||| | | || |||||| ||| |||||||| Sbjct 4833912 GAAGTTTTTAAACCATCTACAATGTTTGGAATGGATCTTTCACAATC 4833958 >seq3 Length=6357299 Score = 100 bits (110), Expect = 1e-16 Identities = 274/409 (67%), Gaps = 13/409 (3%) Strand=Plus/Plus Query 64913 CCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAGATAGGCTCAACAATGAGACCA 64972 ||||| | ||| | ||| || ||||||||| |||| || || | || ||| Sbjct 2513328 CCATTAACTAATAACATTGGTATAATTGGTATATAATAGTCTGGTTGAATGGATTCACCT 2513387 Query 64973 TCATCATCCAAATACTTCAA-AATGGCATCATCCTCTT--TTGGAAATATAGAACGAGTT 65029 || || || | ||| || || ||||| ||||||| || ||| ||| || ||| | Sbjct 2513388 TCTTCCTCTAGATAGTTTAATAATGG-ATCATCCAATTCATTGAAAAGGTA--ACGTGCA 2513444 Query 65030 ATTTTATTCAA-TTGAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCAGTTCGT-- 65086 | | ||||| || ||| | |||||||| | ||||| ||| ||| | || Sbjct 2513445 ACTGG-TTCAAGTTTTGTAAAGATATATCTAGCTGATGCAGAATCTGAACCACCTTGTAA 2513503 Query 65087 -CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 || || |||||||||||| |||| |||| || | ||| |||||||| | ||||| Sbjct 2513504 ACGAGTACCAAACTGACCACTTGGTGTTAACAATGGTAAATTATTTGAACCTACGAAATT 2513563 Query 65146 CTGAGCCATTCCGATAATTGCTGCATTTAAA-CTCGCTTCACCGTGATGATATCCTGAAT 65204 ||||||||| | ||||| || ||||||| | || ||||| |||||||| | | Sbjct 2513564 ATGAGCCATTTTAACAATTGTTGAATTTAAAGATTGC-TCACCATGATGATAGGAAGTTT 2513622 Query 65205 GTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAA 65264 |||| | ||||| || ||||| | |||||| ||||| |||||||| ||||| Sbjct 2513623 GTTCGGCTACATAACCTGACAATTGTGAAACTTTAATTTCATTTGTTAAACGACGTTTAA 2513682 Query 65265 ATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCATCCATTAA 65313 ||| | | | | ||||| ||| || ||| || ||||| ||||| Sbjct 2513683 ATGATGCAAATAGAATTTTACGTTGACCTGGTTTTAAACCATCGATTAA 2513731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235679882233650