Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 147 5e-30 seq5 129 1e-24 seq4 123 6e-23 seq2 120 7e-22 >seq3 Length=6357299 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | ||| ||||| || ||||||||||| || ||||| | || || | || Sbjct 5640442 TCTGAGGACCAAGTGGAGAGTTGATTCTTTTTGGATATTGTAATCAGAGAGAGTACGACC 5640383 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || ||||| || || |||||||| || || |||| ||||| || Sbjct 5640382 ATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTT 5640323 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || |||||| ||| || || || ||| ||||| | |||||| ||||| || || Sbjct 5640322 ATCTTGAATCTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAACTTCGAGTGTAAT 5640263 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||||||||| | ||||| Sbjct 5640262 AGTCTTACCGGTGAGGGTCTTTACAAAGATTTGCAT 5640227 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| || || || || ||||||||||||||||| | | || | || Sbjct 3722566 TCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGATAAAGTACGACC 3722625 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || |||||||| |||||||| || || || | ||||| || Sbjct 3722626 ATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCTTT 3722685 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| ||| |||||||||||| |||| || | |||||| ||||||||||| Sbjct 3722686 GTCTTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGAT 3722745 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || | || || || || | ||||| || Sbjct 3722746 GGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCATCTT 3722784 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||| || || ||||| ||||||||||| | || || | || Sbjct 5878562 TCTTAAAACTAAATGAAGAGTTGATTCCTTTTGAATGTTATAATCTGAGAGAGTACGACC 5878621 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || ||||| | | |||||| || || |||| ||||| || Sbjct 5878622 ATCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATACCTTCTTT 5878681 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| ||| || ||||| ||| | ||||| | |||||| || | |||||| Sbjct 5878682 ATCTTGGATCTTGGCTTTAACATTTTCAATGTTATCAGAACCTTCAACTTCTAAAGTGAT 5878741 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || ||||| | ||||| Sbjct 5878742 TGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 5878777 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||| || || ||||| ||||| || || | || || | || Sbjct 2332052 TCTTAATACTAAATGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAGAGAGTACGACC 2331993 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || |||||||| ||||| ||||||||||| || || | ||||| || Sbjct 2331992 ATCTTCTAATTGTTTACCTGCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCTTT 2331933 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||| || ||| || || |||||| | ||||| | |||||| || | ||||| Sbjct 2331932 ATCTTGGATTTTAGCTTTAACATTCTCGATGTTATCAGAACCTTCAACTTCTAATGTGAT 2331873 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || || | ||||| Sbjct 2331872 GGTTTTACCAGTGAGAGTTTTAACGAAAATTTGCAT 2331837 >seq5 Length=5125352 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | || |||||||| |||||||||||||| ||||| | || || | || Sbjct 2812329 TCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGGCC 2812270 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || ||||| || || |||||||| || || |||| ||||| || Sbjct 2812269 ATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTT 2812210 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||| || ||| || ||||| ||| | ||| | ||| || || | ||||| Sbjct 2812209 GTCTTGGATTTTGGCTTTGACATTTTCAATGTTATCACTACCTTCGACTTCCAAGGTGAT 2812150 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || ||||| | ||||| Sbjct 2812149 GGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 2812114 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || |||||||| |||||||||||||| || || | || || | || Sbjct 2812101 TCTTAAAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACC 2812042 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || ||||| || | | |||||| || || || | ||||| || Sbjct 2812041 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCTTT 2811982 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||| || ||| || ||||| ||| | ||| | ||||||||| | ||||| Sbjct 2811981 GTCTTGGATTTTGGCTTTGACATTTTCAATGTTATCACTACCTTCAACCTCTAAGGTGAT 2811922 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || |||||||| || ||||| | ||||| Sbjct 2811921 GGTCTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 2811886 >seq4 Length=5450249 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | || ||||||||||| ||||| ||||||||||| | ||| || | || Sbjct 5084177 TCTAAGAACTAAATGGAGAGTGGACTCCTTTTGAATGTTATAATCAGAAAGAGTACGACC 5084236 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || ||||| | | |||||| || || |||| ||||| || Sbjct 5084237 ATCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATACCTTCTTT 5084296 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || || || ||||| || | ||||| | |||||| || | |||||| Sbjct 5084297 ATCTTGAATTTTAGCCTTTACATTTTCAATATTATCAGAACCTTCAACTTCTAAAGTGAT 5084356 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || ||||| | ||||| Sbjct 5084357 AGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 5084392 >seq2 Length=8484197 Score = 120 bits (132), Expect = 7e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||| ||||| || ||||||||||| || ||||| | ||| || | || Sbjct 7199021 TCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGGATATTGTAATCGGAAAGAGTACGACC 7199080 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | || || || || ||||| | | |||||| || || || | ||||| || Sbjct 7199081 GTCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGATCTGGTGGGATACCTTCTTT 7199140 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||| || ||| || ||||| ||| | ||||| | |||||||||||| ||||| Sbjct 7199141 ATCTTGGATTTTGGCTTTAACATTTTCAATGTTATCAGAACCTTCAACCTCGAGGGTGAT 7199200 Query 211079 CGTCTTTCC 211087 ||||| || Sbjct 7199201 GGTCTTACC 7199209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151391082965