Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq6 102 7e-17 seq1 95.1 1e-14 seq4 93.3 3e-14 seq3 91.5 1e-13 seq2 84.2 2e-11 >seq6 Length=3602379 Score = 102 bits (112), Expect = 7e-17 Identities = 196/282 (70%), Gaps = 9/282 (3%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | || | ||||||||||||||||||||| || || | Sbjct 961261 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCTGAA 961202 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || || | || | |||||||| ||| ||| Sbjct 961201 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGGGGA 961142 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || ||| || ||| |||| | | | || || || || Sbjct 961141 ATACCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATATTATC--TGAACCTTCAA 961084 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT-ATTACAAT- 101247 ||| | ||| |||||||| || || | ||||||| ||||||||||||| ||| ||| Sbjct 961083 CTTCTAAGGTGATAGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCATTCCTTAAAATT 961024 Query 101248 -ATATT-TTTTACTTTGTATATATATGTAATGACTTTAATTA 101287 |||| ||||| ||| | ||| ||| || | | |||| ||| Sbjct 961023 ATTATTATTTTATTTTATTTATTTATTTATTTA-TTTATTTA 960983 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | || | ||||||||||||||||||||||||||| | Sbjct 961717 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTGTAATCTGAA 961658 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || ||| | || || | |||||| ||| || Sbjct 961657 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGA 961598 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || |||||| ||| |||| | | | || | || || Sbjct 961597 ATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTGTCGCT--ACCTTCGA 961540 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | || |||||||| || || | ||||||| |||||||||||| Sbjct 961539 CTTCTAATGTGATAGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 961491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 101008 ATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATC 101067 ||| || |||| |||||||| || | || | ||||||||||||||||||||| || || Sbjct 961949 ATTTCCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTC 961890 Query 101068 GGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTAC 101127 | | ||| |||||| |||||||| || || | || | |||||||| ||| Sbjct 961889 TGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGG 961830 Query 101128 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGT 101187 || | |||||||| || |||||| ||| |||| | | | || || || | Sbjct 961829 TGGGATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATATTATC--TGAACCT 961772 Query 101188 T--GTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | ||| | || |||||||| || || || ||||||| ||| |||||||| Sbjct 961771 TCAACTTCCAAAGTGATAGTTTTACCTGTTAAAGTTTTAACAAAGATTTGCAT 961719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | || | ||||||||||||||||||||| ||||| | Sbjct 961489 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGAG 961430 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || || | || | |||||||| ||| ||| Sbjct 961429 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGGGGA 961370 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165 | |||||||| || |||||| ||| |||| Sbjct 961369 ATACCTTCTTTATCTTGAATTTTGGCTTTAACAT 961336 >seq1 Length=4923596 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | || | ||||||||| ||||||||||||||||| | Sbjct 2811536 CCACCTCTTAATCTTAATACTAAATGAAGAGTTGATTCCTTTTGAATATTGTAATCTGAT 2811477 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | |||||| |||||||| || ||| | || | |||||||| ||| || Sbjct 2811476 AAAGTACGGCCATCTTCTAATTGTTTACCGGCAAAAATTAATCTTTGTTGATCTGGTGGA 2811417 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || |||||| ||| |||| | | | || | || || Sbjct 2811416 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTCTCAATATTATC--AGAACCTTCAA 2811359 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||| | || || ||||| || || | ||||||| ||||||||||||| Sbjct 2811358 CTTCTAATGTTATTGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCATT 2811309 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||||||||| | || | ||| ||||||||||||||||||||||| | Sbjct 2811992 CCACCTCTTAATCTTAACACTAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCTGAT 2811933 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | |||||| |||||||| || || | ||||| | |||||| ||| || Sbjct 2811932 AAAGTACGGCCATCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 2811873 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || ||||| ||| |||| | | | || | || || Sbjct 2811872 ATACCTTCTTTATCTTGGATTTTAGCTTTAACATTCTCGATATTATC--AGAACCTTCAA 2811815 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | || || ||||| || || | ||||||| |||||||||||| Sbjct 2811814 CTTCTAATGTGATGGTTTTACCGGTGAGAGTTTTAACAAAAATTTGCAT 2811766 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||||||||||| || | ||||||||| ||||||||||| ||||| | Sbjct 2811764 CCACCTCTTAATCTTAACACCAAATGAAGAGTTGATTCCTTTTGAATATTATAATCTGAT 2811705 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || || | ||||| | |||||| ||| || Sbjct 2811704 AAAGTACGACCATCTTCTAATTGTTTACCTGCGAAAATAAGACGTTGTTGATCTGGTGGA 2811645 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || ||||| ||| |||| | | | || | || || Sbjct 2811644 ATACCTTCTTTATCTTGGATTTTAGCTTTAACATTCTCGATATTATC--AGAACCTTCAA 2811587 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | || |||||||| || || | ||||||| |||||||||||| Sbjct 2811586 CCTCTAAAGTGATAGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 2811538 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 101008 ATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATC 101067 ||| || |||| |||||||| || | || | ||| ||||||||||||||||||||||| Sbjct 2812224 ATTTCCACCTCTTAATCTTAAAACTAAATGGAGAGTAGATTCTTTTTGAATATTGTAATC 2812165 Query 101068 GGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTAC 101127 | | ||| |||||| |||||||| || ||| | || | |||||||| ||| Sbjct 2812164 TGATAAAGTACGACCATCTTCTAATTGTTTACCGGCAAAAATTAATCTTTGTTGATCTGG 2812105 Query 101128 GGGCACGCCTTCTTTGTC 101145 || | |||||||| || Sbjct 2812104 TGGAATACCTTCTTTATC 2812087 >seq4 Length=5450249 Score = 93.3 bits (102), Expect = 3e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | ||| | ||||||||||||||||||||||||||| | Sbjct 5083938 CCACCTCTTAATCTTAAAACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAG 5083997 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || ||| | || || | |||||| ||| || Sbjct 5083998 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGA 5084057 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165 | |||||||| || |||||| ||| |||| Sbjct 5084058 ATACCTTCTTTATCTTGAATTTTGGCTTTAACAT 5084091 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | ||| | ||||||||| ||||||||||||||||| | Sbjct 5084394 CCACCTCTTAATCTTAAAACTAAGTGAAGAGTTGATTCCTTTTGAATATTGTAATCAGAG 5084453 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || ||| | || || | |||||| ||| || Sbjct 5084454 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGA 5084513 Query 101132 ACGCCTTCTTTGTC 101145 | |||||||| || Sbjct 5084514 ATACCTTCTTTATC 5084527 >seq3 Length=6357299 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||||||| || | || | ||||||||| ||||||||||| ||||| | Sbjct 2331835 CCACCTCTCAATCTTAATACTAAATGAAGAGTTGATTCCTTTTGAATATTATAATCTGAT 2331776 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || ||| | || | |||||||||||| || Sbjct 2331775 AAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGGTCTGGTGGG 2331716 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || ||||| ||| |||| || || | | | || || Sbjct 2331715 ATACCTTCTTTATCTTGGATTTTAGCTTTTACAT-TTTCAATGT-TATCAGAACCTTCAA 2331658 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATTACAATAT 101249 ||| | || || ||||| || || | ||||||| |||||||||||| | | | ||| Sbjct 2331657 CTTCTAATGTGATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCATACTGAAATTAT 2331598 Query 101250 ATT 101252 ||| Sbjct 2331597 ATT 2331595 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||||||| || | || | ||||||||| ||||||||||| ||||| | Sbjct 2332519 CCACCTCTCAATCTTAATACTAAATGAAGAGTTGATTCCTTTTGAATATTATAATCTGAT 2332460 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || ||| | || | |||||||| ||| || Sbjct 2332459 AAAGTACGACCATCTTCTAATTGTTTACCTGCAAAGATTAATCTTTGTTGATCTGGTGGG 2332400 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || ||||| ||| |||| | | | || || || || Sbjct 2332399 ATACCTTCTTTATCTTGGATTTTAGCTTTAACATTCTCGATATTATC--TGAACCTTCAA 2332342 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | || || ||||| || || | ||||||| ||||||||||| Sbjct 2332341 CTTCCAAAGTGATTGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 2332293 >seq2 Length=8484197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | ||| | ||||||||||||||| ||||||||||||| Sbjct 7199010 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGGATATTGTAATCGGAA 7199069 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||||| |||||||| || ||| | || | |||||||| ||| || Sbjct 7199070 AGAGTACGACCGTCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGATCTGGTGGG 7199129 Query 101132 ACGCCTTCTTTGTC 101145 | |||||||| || Sbjct 7199130 ATACCTTCTTTATC 7199143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409660595297619