Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 131 1e-25 >seq2 Length=8484197 Score = 131 bits (144), Expect = 1e-25 Identities = 210/299 (70%), Gaps = 11/299 (4%) Strand=Plus/Minus Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| || ||||||||||| ||||||||||| | ||| | ||| || ||||| ||||| Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||||||||||||||||| | ||||||||| | ||| ||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 ||| || || || || ||||| || || || || | || || || || || Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGA---ATCTGAATCATT 2356668 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||| |||||||||| | || || || |||| || |||||||| | || || || Sbjct 2356667 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 2356608 Query 4787 AAATAATTTA-CTT---TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 |||||||||| ||| ||| | | |||| ||||||||| || |||| || ||| Sbjct 2356607 AAATAATTTATCTTTAGTTTGCTTA----TCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 131 bits (144), Expect = 1e-25 Identities = 210/299 (70%), Gaps = 11/299 (4%) Strand=Plus/Plus Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| || ||||||||||| ||||||||||| | ||| | ||| || ||||| ||||| Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||||||||||||||||| | ||||||||| | ||| ||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 ||| || || || || ||||| || || || || | || || || || || Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGA---ATCTGAATCATT 3675118 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||| |||||||||| | || || || |||| || |||||||| | || || || Sbjct 3675119 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 3675178 Query 4787 AAATAATTTA-CTT---TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 |||||||||| ||| ||| | | |||| ||||||||| || |||| || ||| Sbjct 3675179 AAATAATTTATCTTTAGTTTGCTTA----TCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 116 bits (128), Expect = 3e-21 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 ||||| ||||||||||||||||||| || ||||| ||||| || || || ||||| ||| Sbjct 2356428 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 2356369 Query 4899 TCTGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTC 4957 |||| | ||| ||||| ||| |||||| | | | |||||| ||||| ||||| || Sbjct 2356368 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATC 2356310 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAA 4993 | || |||||||| ||||||||||| || || || Sbjct 2356309 AGATGCAGCAAAAAATGCCAAAACATGTGAGATGAA 2356274 Score = 116 bits (128), Expect = 3e-21 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 ||||| ||||||||||||||||||| || ||||| ||||| || || || ||||| ||| Sbjct 3675358 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 3675417 Query 4899 TCTGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTC 4957 |||| | ||| ||||| ||| |||||| | | | |||||| ||||| ||||| || Sbjct 3675418 TCTGGAATTTGTACTTC-AGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATC 3675476 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAA 4993 | || |||||||| ||||||||||| || || || Sbjct 3675477 AGATGCAGCAAAAAATGCCAAAACATGTGAGATGAA 3675512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049386608653