Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 190 3e-43 seq2 131 2e-25 >seq4 Length=5450249 Score = 190 bits (210), Expect = 3e-43 Identities = 1124/1782 (63%), Gaps = 92/1782 (5%) Strand=Plus/Minus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 ||||| ||||||||||||||||| |||| ||| ||||| |||||||||||| Sbjct 1505912 GTACGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCATGAGTAGAAATGCATTGAG 1505853 Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931 || ||||| | | | | || || || || || ||| | ||||||||||||||| Sbjct 1505852 GTGAGTTTAGCAAAGGTTGGTTCAGCAATGAAAACATTGAAACTTTGACTTTGATCGATG 1505793 Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991 ||||| || | |||||| ||||| | || | || ||||| | |||||||||| ||| Sbjct 1505792 AAAGCACCACGATCAGCAGCCATATCGATGAGAGTTCTTTGACGGATTTCCCAAACTGTT 1505733 Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTT-----TGTATTTTGAATGGAACCACCAT 77046 || | | || ||| | |||||| || | | || ||| |||||||||||| Sbjct 1505732 TTATAGAGTTCTTTCAAATCATCAGGGATGCCACCGATGGATT--GAATGGAACCACGTG 1505675 Query 77047 CTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCT-CTGTTAAAACTCTA 77105 | | | ||| |||||| || || ||| ||| || | | | | | || Sbjct 1505674 CAGCAACGATTTGATTCTTCATCTCTGGTGACCA-AATGCCCAATTCCATGAGATCTTCG 1505616 Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 || | || || || ||| ||||| || | || || | |||| ||||||| || Sbjct 1505615 AGTAATTGTTTGTTGACAATTGTGAATTCACCTGCTAAAACACGACGACTGTAAATGTTG 1505556 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 || || ||||| | |||||||||| || | |||||| || ||||| |||||| Sbjct 1505555 GAAGTGTAAGGTTCAAAGCATTCATTGTTACCAAGGATTTGACTTGTTGAAGCGGTTGGC 1505496 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGA---TTTTATCTTTTAGA 77282 || ||||| | | | ||| | | |||| | ||| | ||||| ||||| Sbjct 1505495 ATTGGTGCAATGAGGAGTGAATTACGTAAACCACCCTTATTGACAATGTTATCCTTTAGC 1505436 Query 77283 TATTTCCAATCCCAA--AGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTC 77340 | | ||||| |||| ||| || ||| ||||| ||| | ||| |||| || || | Sbjct 1505435 TCTGCCCAATTCCAACGAGAACTT--GGTGTAACATTCCACATATCAAATTGGAGGATAC 1505378 Query 77341 CGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCT-GTTTCAGCTAGTTCA 77399 | || ||| ||| || || | | |||||| | || || | || || | |||| Sbjct 1505377 CTTTGGAAGCTGGTGAACCTTTGAAAGATTCATAGGTACCATCACGGATC-GCCAATTCA 1505319 Query 77400 CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT 77459 | || ||| || | | ||||| |||||| || | ||| | || | | Sbjct 1505318 TGAGAGGCAGTCAAAGCGGCAAAGTAAATGGTTTCGGCGATTTCAACATTTA-ATTTAGC 1505260 Query 77460 G-CTTCAATACTATCAAACGG-ATA---ATGTAAAAGAATAAAGGCATCTGCTAATCCCT 77514 | | ||| |||||| || || ||| || | || ||| | |||| || || || | Sbjct 1505259 GGCGGCAACACTATCGAAAGGCATACGCATTTTAATGAAAA----CATCGGCCAAACCTT 1505204 Query 77515 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGAT 77574 ||| ||||||||||| || | |||||| ||| ||| ||||||| || | | |||| Sbjct 1505203 GAATACCAATACCAATTGGACGATGTCTAAGATTTGAAGTTTTAGCCTCAGCCACTGGAT 1505144 Query 77575 AATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTA 77634 |||| ||| || || || || ||||| || || ||||| || ||| Sbjct 1505143 AATAGTTACGATCGATGATAACGTTAAGATTG---ACGGTTA--TTAACTTTGTGATTTC 1505089 Query 77635 GTTTAAGAAAA-----TCAAA-------TCTT--------------CCATCTAT------ 77662 || ||| ||||| |||| || || | Sbjct 1505088 AAATAGGAATTGATGGTCAAACTCTTTTTCTTTTGGATCGGTTGAGCCTACTTTTTGACG 1505029 Query 77663 AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCGTTGG 77721 ||||||| | | |||||||| || ||||||||||| || | |||| | | | || Sbjct 1505028 AACAAACTTTGGAAGTGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATGT 1504969 Query 77722 CATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGT 77781 ||||| || ||||||||||| |||||||||| | || || || | ||| | ||| | Sbjct 1504968 G-TATTGAATGATCTCGGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGAT 1504910 Query 77782 TGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTG 77841 || || ||| || | ||||| || | ||| || ||||| || ||||||| || | Sbjct 1504909 TGGATTTAGCATTACAGGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAG 1504850 Query 77842 ATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTT-----------GTA 77890 | || ||||| | ||| | || |||||| || | | | | || Sbjct 1504849 ACTCCATAATGGCGAACCAAAGTTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAGGTG 1504790 Query 77891 TCGCCTCTCTCTTTCATATTGAGTATATAGC-CGTTCAAATTCATCTCCCCAAACATCAT 77949 | || || | ||||| || ||| ||| || | ||| ||| | ||| Sbjct 1504789 TTGCTTCG-TATTTCAAATAGAG-----AGCACGATG---TTCCTCTGAGTGAGTTTCAG 1504739 Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTT 78009 | | || || ||||||||| || | | | ||| || |||| || | || |||| Sbjct 1504738 CAAGACCTGGTGCTTCATTTGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTT 1504679 Query 78010 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069 |||||| | |||| | ||| |||||| |||||||||| | ||| ||||| | Sbjct 1504678 CCATAAAAATATCACTAACCCAAAGAGCATAGAATAGATCTCTAGCTCTCATCTCTTCCT 1504619 Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129 | || || || || || ||||| | ||| || | | ||||| ||||||||||| | | Sbjct 1504618 TACCAGTGTTTTTCTTTAGATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGT 1504559 Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189 | | || | | || || || ||| || ||||| | || | || || | || Sbjct 1504558 AAACGGCAAAGGCACCCTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCAT 1504499 Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAAC 78249 | |||| | | |||||| | | ||| || ||| ||||| || ||| |||||||| Sbjct 1504498 TGAAAACACGAAGCATTGGCACCAAACCATTGCTTGTACCATTGGTACCACGAATATAAC 1504439 Query 78250 TTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTA 78309 || | || ||||| ||| || | || || || || || || |||| || || | Sbjct 1504438 TTTGAGCAGCACGAATCTTATGAACTGCAATACCAATACCACCGGCACTCTTTGAAATGA 1504379 Query 78310 GAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAA-GA 78368 | || || ||||||| || || || ||||| || || || ||| |||| | || | Sbjct 1504378 GTGCACATTGTTTCAAAGTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCA 1504319 Query 78369 AGAAAACAGCTAGACATTTGATGATGA-ACAGTTCCTGCATTAAATAATGTCGGAGATGC 78427 ||||| || | |||||||| || ||| || ||||| || |||| || || | || Sbjct 1504318 AGAAACAAGAT-GACATTTG-TGGTGATGGTGTACCTGCGTTGAATAGAGTTGGTGTGGC 1504261 Query 78428 ATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCA 78487 ||| || ||| |||| ||||| | | ||||| || | || || ||||| | ||| Sbjct 1504260 ATGAGTGAACAATTTCTCAGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTC 1504201 Query 78488 TTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGG 78529 ||| || || | | |||||||||||||| || || || Sbjct 1504200 GCCATGGATACCAATGGAGACACGCATCAACATGTGTTGTGG 1504159 >seq2 Length=8484197 Score = 131 bits (144), Expect = 2e-25 Identities = 210/297 (71%), Gaps = 10/297 (3%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 |||||| ||||||||||| | |||||| || | ||||||||| || |||||||| | Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| |||||| || | ||||| | ||||||||||| ||| |||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG--GCTTCGTTGTGT 48317 ||| || || || || |||||||| | | ||| | || || || | | | Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCT--GCAAATGAATCTGAATCATTT 2356667 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| | | |||||| || |||||||| || | ||| || |||||||| || |||||| Sbjct 2356666 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 2356607 Query 48378 AAGAGAAAGtttttttCA--TTGC-TATCTTTAACGTAAGTATCTATTAAAAGACTA 48431 || || || | || | |||| ||||||||| ||||| || |||||||||||| Sbjct 2356606 AA---TAATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 131 bits (144), Expect = 2e-25 Identities = 210/297 (71%), Gaps = 10/297 (3%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 |||||| ||||||||||| | |||||| || | ||||||||| || |||||||| | Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| |||||| || | ||||| | ||||||||||| ||| |||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG--GCTTCGTTGTGT 48317 ||| || || || || |||||||| | | ||| | || || || | | | Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCT--GCAAATGAATCTGAATCATTT 3675119 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| | | |||||| || |||||||| || | ||| || |||||||| || |||||| Sbjct 3675120 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 3675179 Query 48378 AAGAGAAAGtttttttCA--TTGC-TATCTTTAACGTAAGTATCTATTAAAAGACTA 48431 || || || | || | |||| ||||||||| ||||| || |||||||||||| Sbjct 3675180 AA---TAATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 109 bits (120), Expect = 8e-19 Identities = 117/150 (78%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 ||||| |||| || || |||||||||||||| || ||||| || || |||||||| ||| Sbjct 2356428 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 2356369 Query 48489 TCTGTGATCTGTACCTCCGTACA-AAATC--GTTCAGCCAAATTCTCATTTACTATTCCA 48545 |||| || ||||| || | ||| ||||| ||| || | || |||||||| || ||| Sbjct 2356368 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCA 2356312 Query 48546 TCACTAGCAGCAAAAAATGCTAATACATGT 48575 ||| |||||||||||||| || |||||| Sbjct 2356311 TCAGATGCAGCAAAAAATGCCAAAACATGT 2356282 Score = 109 bits (120), Expect = 8e-19 Identities = 117/150 (78%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 ||||| |||| || || |||||||||||||| || ||||| || || |||||||| ||| Sbjct 3675358 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 3675417 Query 48489 TCTGTGATCTGTACCTCCGTACA-AAATC--GTTCAGCCAAATTCTCATTTACTATTCCA 48545 |||| || ||||| || | ||| ||||| ||| || | || |||||||| || ||| Sbjct 3675418 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCA 3675474 Query 48546 TCACTAGCAGCAAAAAATGCTAATACATGT 48575 ||| |||||||||||||| || |||||| Sbjct 3675475 TCAGATGCAGCAAAAAATGCCAAAACATGT 3675504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668443982240