Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 214 3e-50 seq2 116 5e-21 >seq4 Length=5450249 Score = 214 bits (236), Expect = 3e-50 Identities = 1168/1846 (63%), Gaps = 94/1846 (5%) Strand=Plus/Minus Query 75407 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 75466 ||||| ||||||||||||||||| |||| ||| ||||| |||||||||||| Sbjct 1505912 GTACGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCATGAGTAGAAATGCATTGAG 1505853 Query 75467 GTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 75526 || ||||| | | | | || || || || || ||| | ||||||||||||||| Sbjct 1505852 GTGAGTTTAGCAAAGGTTGGTTCAGCAATGAAAACATTGAAACTTTGACTTTGATCGATG 1505793 Query 75527 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 75586 ||||| || | |||||| ||||| | || | || ||||| | |||||||||| ||| Sbjct 1505792 AAAGCACCACGATCAGCAGCCATATCGATGAGAGTTCTTTGACGGATTTCCCAAACTGTT 1505733 Query 75587 TTGAAAACTTGTTTGATATCATCTGGAA-------GATTTGTATTTTGAATGGATCCGCC 75639 || | | || ||| | |||||| || | ||| | ||| ||||||| || | Sbjct 1505732 TTATAGAGTTCTTTCAAATCATCAGGGATGCCACCGAT--GGATT--GAATGGAACCACG 1505677 Query 75640 ATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCT-CGGTTAAAACTC 75698 ||| | ||| |||||| ||||| ||| ||| | | | | | | || Sbjct 1505676 TGCAGCAACGATTTGATTCTTCATCTCTGGTGACCA-AATGCCCAATTCCATGAGATCTT 1505618 Query 75699 TAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATAT 75758 || | || || |||||| ||||| || | || || | ||| ||||||| | Sbjct 1505617 CGAGTAATTGTTTGTTGACAATTGTGAATTCACCTGCTAAAACACGACGACTGTAAATGT 1505558 Query 75759 TACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCG 75818 | || || ||||| | |||||||||| || | |||||| |||||||| || | Sbjct 1505557 TGGAAGTGTAAGGTTCAAAGCATTCATTGTTACCAAGGATTTGACTTGTTGAAGCGGTTG 1505498 Query 75819 GCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGA---TTTTATCTTTTA 75875 |||| ||||| | | | ||| | | |||| | ||| | ||||| |||| Sbjct 1505497 GCATTGGTGCAATGAGGAGTGAATTACGTAAACCACCCTTATTGACAATGTTATCCTTTA 1505438 Query 75876 GATATTTCCAATCCCAA--AGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 | | | ||||| |||| ||| || |||| ||||| ||| | ||| |||| || || Sbjct 1505437 GCTCTGCCCAATTCCAACGAGAACT--TGGTGTAACATTCCACATATCAAATTGGAGGAT 1505380 Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTC-CTTTTCAGCTAGTT 75992 || ||| ||| ||| || || | | ||| || || || || | || || | || Sbjct 1505379 ACCTTTGGAAGCTGGTGAACCTTTGAAAGATTCATAGGTACCATCACGGATC-GCCAATT 1505321 Query 75993 CGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTT 76052 | | || || || | | ||||| |||||| || | ||| | || | Sbjct 1505320 CATGAGAGGCAGTCAAAGCGGCAAAGTAAATGGTTTCGGCGATTTCAACATTTA-ATTTA 1505262 Query 76053 GCG-CTTCAAGACTATCAAAAGG-ATA---ATGTAAAAGAATAAATGCATCTGCTAGTCC 76107 ||| | ||| |||||| ||||| ||| || | || ||| | |||| || | || Sbjct 1505261 GCGGCGGCAACACTATCGAAAGGCATACGCATTTTAATGAAAA----CATCGGCCAAACC 1505206 Query 76108 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGG 76167 |||| ||||||||||| || | |||||| ||| ||| ||| ||| || | | || Sbjct 1505205 TTGAATACCAATACCAATTGGACGATGTCTAAGATTTGAAGTTTTAGCCTCAGCCACTGG 1505146 Query 76168 GTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTT 76227 ||||| ||| ||| || || || ||||| ||| || ||||| || || Sbjct 1505145 ATAATAGTTACGATCGATGATAACGTTAAGATT---GACGGTTA--TTAACTTTGTGATT 1505091 Query 76228 T--AGTTTGA---GAAAATCAAA---------TTTTCCATC--------------TATCA 76259 | | | || || ||||| |||| ||| | | | Sbjct 1505090 TCAAATAGGAATTGATGGTCAAACTCTTTTTCTTTTGGATCGGTTGAGCCTACTTTTTGA 1505031 Query 76260 CAAACATATT----AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTG 76315 | |||| | | ||| |||||||| || |||||||||||||| | |||| | Sbjct 1505030 CGAACAAACTTTGGAAGTGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTGGTGAT 1504971 Query 76316 GCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGG 76375 | ||||| || ||||| || || |||||||||| | || || || | ||| | ||| Sbjct 1504970 GTGTATTGAATGATCTCGGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGA 1504911 Query 76376 TTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGT 76435 ||| || ||||| | ||||| || | || || ||||| |||||||||| || Sbjct 1504910 TTGGATTTAGCATTACAGGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGA 1504851 Query 76436 GATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTT-----------GT 76484 || || ||||| | ||| | || |||||| || | | | | || Sbjct 1504850 GACTCCATAATGGCGAACCAAAGTTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAGGT 1504791 Query 76485 ATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544 | ||||| | ||||| || | | | || | ||| ||| | ||| Sbjct 1504790 GTTGCTTCG-TATTTCAAATAGAGAGCA----CGATG---TTCCTCTGAGTGAGTTTCAG 1504739 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 | | ||| || |||||| ||||| | | | ||| || |||| || | || |||| Sbjct 1504738 CAAGACCTGGTGCTTCATTTGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTT 1504679 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 |||||| | |||| | ||| |||||| |||||||||| | ||| ||||| | Sbjct 1504678 CCATAAAAATATCACTAACCCAAAGAGCATAGAATAGATCTCTAGCTCTCATCTCTTCCT 1504619 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 | || || || || || ||||| | || || | | ||||| ||||||||||| | | Sbjct 1504618 TACCAGTGTTTTTCTTTAGATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGT 1504559 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784 | | || | ||||| || || ||| || ||||| | || | ||||| | || Sbjct 1504558 AAACGGCAAAGGCACCCTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCAT 1504499 Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC 76844 | |||| | | |||||| | | || || ||||||||| || ||| |||||||| Sbjct 1504498 TGAAAACACGAAGCATTGGCACCAAACCATTGCTTGTACCATTGGTACCACGAATATAAC 1504439 Query 76845 TTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904 || | |||||||| ||| || | | || || || || || | || || || | Sbjct 1504438 TTTGAGCAGCACGAATCTTATGAACTGCAATACCAATACCACCGGCACTCTTTGAAATGA 1504379 Query 76905 GAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAA-GA 76963 | ||||| ||||||| |||||||| || || || || ||| ||| |||| | || | Sbjct 1504378 GTGCACATTGTTTCAAAGTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCA 1504319 Query 76964 AGAAAACAGCTAGACATTTGATGATGA-ACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022 ||||| || | |||||||| || ||| || ||||| || || | || || | || Sbjct 1504318 AGAAACAAGAT-GACATTTG-TGGTGATGGTGTACCTGCGTTGAATAGAGTTGGTGTGGC 1504261 Query 77023 ATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCA 77082 |||||||||| |||| ||||| | | ||||| || | || | | ||| | || Sbjct 1504260 ATGAGTGAACAATTTCTCAGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTC 1504201 Query 77083 TTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATT 77142 ||| || || | | ||||||||||||||| || || || || || ||| | ||| Sbjct 1504200 GCCATGGATACCAATGGAGACACGCATCAACATGTGTTGTGGACGCTCGACAATTTTACC 1504141 Query 77143 ATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAA 77187 ||| | | | ||| || || |||||| ||||| || ||||| Sbjct 1504140 ATTGA-TACGATGAAGATAGGAACGTTCCAATGTTTTGAATCCAAA 1504096 >seq2 Length=8484197 Score = 116 bits (128), Expect = 5e-21 Identities = 207/298 (69%), Gaps = 12/298 (4%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 |||||| ||||||||||| | ||||| || | ||||||||| || |||||||| | Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 || |||||| || | |||||| | ||||||||| | ||| |||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATC---ATTATG 46805 ||| || || || || || ||||| || | | ||| | || | | ||| || || Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCT--GCAAAT-GAATCTGAATCATT 2356668 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 ||||| ||| ||||| || ||||| || || | ||| || |||||||| || ||||| Sbjct 2356667 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 2356608 Query 46866 AAAGAGAAAGtttttttCA---TCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920 ||| || || | || | | ||||||||| ||| || || |||||||||||| Sbjct 2356607 AAA---TAATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 116 bits (128), Expect = 5e-21 Identities = 207/298 (69%), Gaps = 12/298 (4%) Strand=Plus/Plus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 |||||| ||||||||||| | ||||| || | ||||||||| || |||||||| | Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 || |||||| || | |||||| | ||||||||| | ||| |||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATC---ATTATG 46805 ||| || || || || || ||||| || | | ||| | || | | ||| || || Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCT--GCAAAT-GAATCTGAATCATT 3675118 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 ||||| ||| ||||| || ||||| || || | ||| || |||||||| || ||||| Sbjct 3675119 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 3675178 Query 46866 AAAGAGAAAGtttttttCA---TCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920 ||| || || | || | | ||||||||| ||| || || |||||||||||| Sbjct 3675179 AAA---TAATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 105 bits (116), Expect = 1e-17 Identities = 116/150 (77%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 ||||| |||| ||||| || |||||||| || || ||||| || || |||||||||||| Sbjct 2356428 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 2356369 Query 46978 TCAGTAATCTGTACCTCTGTACA-AAATC--GTTCAGACAAATTCTCATTCACTATTCCA 47034 || | ||| ||||| || | ||| ||||| ||| | | || ||||| || || ||| Sbjct 2356368 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCA 2356312 Query 47035 TCACTAGCAGCAAAAAATGCCAATACATGT 47064 ||| ||||||||||||||||| |||||| Sbjct 2356311 TCAGATGCAGCAAAAAATGCCAAAACATGT 2356282 Score = 105 bits (116), Expect = 1e-17 Identities = 116/150 (77%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 ||||| |||| ||||| || |||||||| || || ||||| || || |||||||||||| Sbjct 3675358 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 3675417 Query 46978 TCAGTAATCTGTACCTCTGTACA-AAATC--GTTCAGACAAATTCTCATTCACTATTCCA 47034 || | ||| ||||| || | ||| ||||| ||| | | || ||||| || || ||| Sbjct 3675418 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCA 3675474 Query 47035 TCACTAGCAGCAAAAAATGCCAATACATGT 47064 ||| ||||||||||||||||| |||||| Sbjct 3675475 TCAGATGCAGCAAAAAATGCCAAAACATGT 3675504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934034621120