Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq6 253 2e-62 seq2 147 2e-30 seq5 102 8e-17 >seq6 Length=3602379 Score = 253 bits (280), Expect = 2e-62 Identities = 207/250 (83%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 8365 GGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTC 8424 |||||| |||||| ||||||| ||||| |||| || ||||| | |||||||||| |||| Sbjct 2008504 GGAGTGAAGTGGCGTGATCTCAGCTCATAGCAATCTTCGCCTGCTGGGTTCAAGCAATTC 2008445 Query 8425 TCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTA-- 8482 |||||||||||||||| |||||||||||| | ||| || | | |||| |||| |||| Sbjct 2008444 TCCTGCCTCAGCCTCCCGAGTAGCTGGGACTGCAGCCATACGGCACCTTGCCAGGCTATT 2008385 Query 8483 -ATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACT 8541 ||||||||||||||||||||| |||||||| ||||| ||||| | ||||||||||||| Sbjct 2008384 TTTTTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGCTGGCCGGTCTGGTCTCGAACT 2008325 Query 8542 CCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAG 8601 |||||| ||| |||| || ||||| ||||||||||||||||||||||||| |||| Sbjct 2008324 CCTGACGTCA--GGATCAGCCAGCCTCACCCTCCCAAAGTGCTGGGATTACAGGGGTGAG 2008267 Query 8602 CCACCGCGCC 8611 | | ||||| Sbjct 2008266 ACTCTGCGCC 2008257 >seq2 Length=8484197 Score = 147 bits (162), Expect = 2e-30 Identities = 210/295 (71%), Gaps = 3/295 (1%) Strand=Plus/Minus Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 |||||| ||||||||||||| ||||| || | ||| |||||||| ||||||||||| Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAA 23627 ||| ||||||| |||| ||||| | ||||||||||| | ||| ||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 ||||||||||| || ||||| || || | |||| |||| || || ||||| Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAA---TGAATCTGAATCATT 2356668 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 |||||| || || ||| | |||||| ||| | ||| ||||||||||||||| || Sbjct 2356667 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 2356608 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTA 23802 || | | ||| || |||||| | ||||| || ||||||| | |||| Sbjct 2356607 AAATAATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 147 bits (162), Expect = 2e-30 Identities = 210/295 (71%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 |||||| ||||||||||||| ||||| || | ||| |||||||| ||||||||||| Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAA 23627 ||| ||||||| |||| ||||| | ||||||||||| | ||| ||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 ||||||||||| || ||||| || || | |||| |||| || || ||||| Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAA---TGAATCTGAATCATT 3675118 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 |||||| || || ||| | |||||| ||| | ||| ||||||||||||||| || Sbjct 3675119 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 3675178 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTA 23802 || | | ||| || |||||| | ||||| || ||||||| | |||| Sbjct 3675179 AAATAATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 140 bits (154), Expect = 3e-28 Identities = 182/248 (73%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 23760 TTTTTCTTCATTAT--CTGT-TATATATGTATCA--ATTAGTAAACTATACATTTCAGAA 23814 |||||||| |||| || | ||||||| ||| | | || | | ||||| |||||||| Sbjct 2356473 TTTTTCTTTATTAAAACTTTATATATATATATGATAAATATTTACCTATAAGTTTCAGAA 2356414 Query 23815 TGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACA 23874 || ||||||||||| ||||| ||||| ||||| |||||||| ||||| | | ||| || Sbjct 2356413 TGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAATTTGTACT 2356354 Query 23875 TCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAA 23934 ||| | |||||| | || | ||||| || |||||||||||| |||||||| || Sbjct 2356353 TCAGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCAGCAAAAAAT 2356294 Query 23935 GCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTT---TTTCCAATCATTA 23991 || | ||||| | || ||||| | ||||| | || |||||| || ||||||| | Sbjct 2356293 GCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATTTATATTCCCAATCAACA 2356234 Query 23992 ATATCTTT 23999 |||| || Sbjct 2356233 TTATCATT 2356226 Score = 140 bits (154), Expect = 3e-28 Identities = 182/248 (73%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 23760 TTTTTCTTCATTAT--CTGT-TATATATGTATCA--ATTAGTAAACTATACATTTCAGAA 23814 |||||||| |||| || | ||||||| ||| | | || | | ||||| |||||||| Sbjct 3675313 TTTTTCTTTATTAAAACTTTATATATATATATGATAAATATTTACCTATAAGTTTCAGAA 3675372 Query 23815 TGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACA 23874 || ||||||||||| ||||| ||||| ||||| |||||||| ||||| | | ||| || Sbjct 3675373 TGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAATTTGTACT 3675432 Query 23875 TCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAA 23934 ||| | |||||| | || | ||||| || |||||||||||| |||||||| || Sbjct 3675433 TCAGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCAGCAAAAAAT 3675492 Query 23935 GCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTT---TTTCCAATCATTA 23991 || | ||||| | || ||||| | ||||| | || |||||| || ||||||| | Sbjct 3675493 GCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATTTATATTCCCAATCAACA 3675552 Query 23992 ATATCTTT 23999 |||| || Sbjct 3675553 TTATCATT 3675560 >seq5 Length=5125352 Score = 102 bits (112), Expect = 8e-17 Identities = 194/284 (68%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 64426 TGATGTTATTGGAATTGATGAAGGGCAATTTTTTACTGATATAGTTGAATTTTCTGAAAA 64485 |||||| ||||| ||||||||||| |||||||| | || | || ||||| |||| | Sbjct 2508695 TGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGA 2508636 Query 64486 TATGGCCAATAAAGGAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATATAAAAGAGA 64545 |||| ||| |||| |||| || || || | || |||||| || | ||||| | Sbjct 2508635 CTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGAAA 2508576 Query 64546 ACCATTTGGTAAT--ATCCTAAATCTAGTTCCATTAGCTGAAAAAGTAATAAAATTAAAT 64603 |||||| ||| || | || |||| || |||||| | | | ||| |||| | Sbjct 2508575 ACCATT--CCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTTAACT 2508518 Query 64604 GCTATATGTAAAATATGTTTCAAAGATGCTGCATTTACTAAAAGATTATGCAAAAGTACT 64663 || | |||| | || | ||| || || || ||| | ||| | | | ||||| | Sbjct 2508517 GCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAGTGAT 2508458 Query 64664 GAAATCGAATTAATTGGTGGAGAGGACAAATATAGTTCCGTGTG 64707 || ||||||||||||||||| || ||||||| |||||| || Sbjct 2508457 GATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTG 2508414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487732737400