Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 1e-15 seq2 87.8 2e-12 >seq5 Length=5125352 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 63746 TACCAGAAATAGGTGATAAATTTGCTTCTTTTACAGCTCAAAAAGGTACGTGTGGTATGA 63805 |||| |||| |||||||| || ||||| | | |||||||||||| ||||||||| Sbjct 1297113 TACCTCAAATCGGTGATAAGTTCTCTTCTCGTCATGGTCAAAAAGGTACTTGTGGTATGG 1297054 Query 63806 TTTATCGACAAGAAGATATGCCTTTTACCAAAGACGGTATCGTACCCGATCTCGTCATCA 63865 |||||| ||||| ||| | || || || || |||||||| || ||| || | | | Sbjct 1297053 CTTATCGTCAAGAGGATTTACCATTCACTGTTGAAGGTATCGTTCCAGATATCATTGTAA 1296994 Query 63866 ATCCACACGCTTTTCCCAGTCGTATGACCGTT 63897 ||||||| ||| |||| |||||||||| || Sbjct 1296993 ATCCACATGCTATTCCATCTCGTATGACCATT 1296962 >seq2 Length=8484197 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 155851 TCATTTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAA 155910 |||||||||| || | ||| || ||||| | || | ||||||||||||| | Sbjct 6320136 TCATTTTAGCGGTATGAATCTTAAAGATTTGTTCTCTACCATGTTCATCGGGTAATGAGA 6320077 Query 155911 TTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTC 155970 | || | | | ||| || || || || | | ||| ||||| || || | || || Sbjct 6320076 TCTCAACGTGTACTTCTAAACGACCTGGACGAAGTAAAGCTTCATCGATCATATCCTTTC 6320017 Query 155971 TGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACA 156030 | ||||||||||| |||| || ||||| ||||||||||| ||||| || || | | | Sbjct 6320016 TATTGGTCATACCAATGACCAAGATGTTATTTAAAGATTCGACACCATCAATCATTGCTA 6319957 Query 156031 ATAATTGATTGACTAC 156046 |||||||||| || || Sbjct 6319956 ATAATTGATTTACCAC 6319941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667074858123960