Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5 125 7e-24 >seq5 Length=4166812 Score = 125 bits (138), Expect = 7e-24 Identities = 210/299 (70%), Gaps = 11/299 (4%) Strand=Plus/Minus Query 17262 TTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTA 17321 |||| || || || || || ||||| || ||||| || || || |||| ||||| | || Sbjct 871473 TTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCTTCAGGTA 871414 Query 17322 TTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 |||||||||| || | | | | | || || |||||||| || || || || || Sbjct 871413 TTTGAACTTCAGACATGAACTTGGTG-GCAAGGTTTTCGTTGACAATACCATCAGAGGCA 871355 Query 17381 GCGAAAAACGCCAATATATGCTTAATGAAATATTTTTC---GTC---CGGTGTAAGAACG 17434 |||||||| ||||||| || ||| || || | ||| ||| | | || | Sbjct 871354 GCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCATTGTCATTCAATTTATTCTC- 871296 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||| || || | ||| | | | ||| | ||||||| |||||||| || ||| || Sbjct 871295 --CCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTGCCTCT 871238 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTATC 17553 |||||||||||||||||||||||||| | |||| || ||||||| |||| ||||||| Sbjct 871237 GCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATCTATC 871179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545438267000