Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 170 2e-37 >seq5 Length=4166812 Score = 170 bits (188), Expect = 2e-37 Identities = 223/303 (74%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 ||||| |||| |||||||| ||||||||||| |||||||| || ||||||||||| || Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAA-TTTTCATTCACTATTCCGTC 24541 || | || || ||||| | ||| | | | || || ||||| || || || || || Sbjct 871420 TCAGGTATTTGAACTTC-AGACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATC 871362 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT 24600 | ||| || ||||| |||||||||| || ||||| | ||| | || || | || Sbjct 871361 AGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCAT-TGTCATTCAATT 871303 Query 24601 TATTC---CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 24657 ||||| || || |||| ||| | | | ||| | ||||| |||||||||| || Sbjct 871302 TATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTG 871243 Query 24658 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 ||||||||||||||||||||||||| || || ||||| |||||| || | |||||||| Sbjct 871242 CCTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATC 871183 Query 24718 TAT 24720 ||| Sbjct 871182 TAT 871180 Score = 131 bits (144), Expect = 2e-25 Identities = 212/297 (71%), Gaps = 10/297 (3%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || ||||| || ||||| ||||| | ||| || || ||||||||||| ||||| Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT-GGACGCAAATGATCCAGAAAAGA 24252 || ||||| || |||||||| || |||||||| || | || ||| | ||| || | Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTA-CCACTGAAAA 871738 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--AC-CGGCGCTGTCAT 24309 | || ||||| || || ||||| || | | | ||| || | || || | || | Sbjct 871737 AGATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGAGTTGGTA- 871679 Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| | |||||| || || || || |||||||| || || || || || |||| Sbjct 871678 --ATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCAT 871621 Query 24370 TAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 |||| | ||| |||||||||| || ||||| |||||||||||| || | |||| Sbjct 871620 TAAATA-ATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721414462000