Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq24 91.5 1e-13 seq21 84.2 2e-11 >seq24 Length=3408800 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| |||||||| ||||| ||||| ||| ||| ||| | Sbjct 192637 ATGCAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACCTTGGAAGTCGAAGGTTCT 192578 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| || || |||||| | || |||||| Sbjct 192577 GACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATCAA 192518 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || |||||||| || |||||| | ||||| | |||| | |||||||||| Sbjct 192517 CAACGTCTCATCTTTGCCGGTAAACAATTAGAAGACGGCCGAACTCTTTCCGATTACAAC 192458 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || || |||||||||||||| || Sbjct 192457 ATCCAAAAGGAATCTACTCTCCA 192435 >seq21 Length=1919465 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || ||||||||| | ||||||||||| || || ||| | ||| Sbjct 1352701 GACAAGGAAGGTATTCCACCTGATCAACAACGTCTTATCTTTGCTGGAAAGCAATTAGAA 1352760 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | |||| || |||| || || ||||| |||||||| ||||| || | || ||| Sbjct 1352761 GACGGAAGAACTTTGTCCGACTATAACATTCAAAAGGAATCAACTCTCCATCTCGTATTA 1352820 Query 29175 CGATTACGAGGAGG 29188 ||||||| || || Sbjct 1352821 AGATTACGTGGTGG 1352834 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||||||| | ||||||||||| ||||| || || ||||| || |||| || | ||| Sbjct 1444547 GATCAACAACGTCTTATCTTTGCTGGCAAGCAGCTCGAAGACGGCAGAACTTTGTCGGAT 1444606 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCA 29164 ||||| ||||| |||||||| ||||| || Sbjct 1444607 TACAACATTCAAAAGGAATCCACTCTCCA 1444635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335869491375