Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq21 107 2e-18 seq24 91.5 1e-13 seq5 82.4 6e-11 >seq21 Length=1919465 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | |||||| |||||||||||||| || |||| | Sbjct 1444659 CCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGAC 1444600 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | |||| || ||||| ||||| ||| | ||||| | || || || || Sbjct 1444599 AAAGTTCTGCCGTCTTCGAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCAGGTGGA 1444540 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | ||| ||| ||| ||| | Sbjct 1444539 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATAGTGTCAGATCCCTCGACT 1444480 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||||||||| || || |||||||| |||||||| Sbjct 1444479 TCAAGAGTGATGGTCTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 1444433 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || || || | ||| || | ||| | ||||||||||||||| ||||| ||||| Sbjct 1445347 GTTACCACCACGGAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTC 1445288 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | || ||| | |||| || ||||| || || ||| | ||||| | || || || Sbjct 1445287 GGAAAGAGTTCTGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGG 1445228 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||||||||||| |||||| ||| || | | | || ||| ||| Sbjct 1445227 TGGAATACCTTCCTTGTCTTGGATCTTGGTTTTGACATTTTCAATGGTGTCAGATCCCTC 1445168 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | || |||||||| || ||||| || || ||||| |||||||| Sbjct 1445167 GACTTCAAGAGTGATGGTCTTACCAGTTAATGTCTTTACAAAGATTTGCAT 1445117 >seq24 Length=3408800 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | |||||| |||||||| ||||| || |||| Sbjct 192867 CCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCCTTTTGGATGTTGTAATCCGAG 192926 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | ||||| | ||||| || || |||| || | || || || || Sbjct 192927 AGGGTTCTACCATCCTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGTGGG 192986 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||| || || | ||| ||| ||| | || | Sbjct 192987 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTTTCGATAGTGTCAGAGCCTTCTACT 193046 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||||||||| || || ||||| ||||| ||||| ||||||||| Sbjct 193047 TCCAAGGTAATGGTTTTACCTGTTAATGTTTTAACAAAGATTTGCATT 193094 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | |||||| |||||||| ||||| ||||||| | Sbjct 192639 CCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCCGAC 192698 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | |||| || | ||||| || ||| | ||||| | || || || || Sbjct 192699 AAAGTTCTGCCGTCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGTGGG 192758 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT- 21127 | ||||||||||| ||||| || || | ||| ||| || || ||| | Sbjct 192759 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTTTCGATAGTGTC----GGATCCTTC 192814 Query 21128 ---TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||| |||||||| || || | || |||||||| |||||||| Sbjct 192815 GACTTCGAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAAATTTGCAT 192865 >seq5 Length=4166812 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||| ||||||||||| ||||| ||||| | Sbjct 207610 CCACCACGGAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 207551 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||| || || || || || ||| | ||||| | || ||||| || Sbjct 207550 AGGGTACGACCGTCTTCGAGTTGCTTACCGGCAAAGATAAGACGTTGTTGGTCAGGTGGG 207491 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATC---ACCGGGCTCC 21125 | ||||||||||| |||||| || || | ||| ||| || ||| ||| Sbjct 207490 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCGATAGTGTCGGAACC---CTCT 207434 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTT 21177 || | |||||||||||| || || | ||||| || || || ||||||| Sbjct 207433 ACCTCTAAGGTAATGGTCTTACCTGTGAGTGTTTTAACGAAGATCTGCATTT 207382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259071342900