Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 123 3e-23 seq21 114 1e-20 seq24 102 8e-17 seq2 91.5 2e-13 >seq5 Length=4166812 Score = 123 bits (136), Expect = 3e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || ||||| ||||| ||||| || || ||||| ||| | || || || | Sbjct 207382 AAATGCAGATCTTCGTTAAAACACTCACAGGTAAGACCATTACCTTAGAGGTAGAGGGTT 207441 Query 40748 CCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | ||||| |||||| || || | ||||| || || ||||| | ||| Sbjct 207442 CCGACACTATCGAAAACG-TCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 207500 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| || |||| || || || || || || |||| || |||||| ||||||| Sbjct 207501 CAACAACGTCTTATCTTTGCCGGTAAGCAACTCGAAGACGGTCGTACCCTCTCCGACTAC 207560 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| |||||| | || || ||||| || Sbjct 207561 AACATCCAAAAGGAGTCTACTCTCCATCTCGT 207592 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 117034 CGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGC 117093 ||| || |||| || || || ||||| || || |||| || || |||||| | Sbjct 871700 CGAACGTTTGGTAGCTTTTGCCGCCGTTGAAGGTATCTTTTTCAGTGGTAGTTTCTGTTC 871759 Query 117094 CATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCAT 117153 || |||||||||||||| || || |||||||| || || || || ||||||| | || Sbjct 871760 GATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGTCTCACCTTTTCCAACGAGTTGAT 871819 Query 117154 CTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 | | ||||| ||||| |||||||||||||||||| Sbjct 871820 CAGTCGTGACGAAGGTCTCCATTGCGACTTTGCCTGT 871856 >seq21 Length=1919465 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || || ||||||||| |||| ||||||| | Sbjct 1444661 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTCGAAGTCGAAGGTTCG 1444720 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| ||||| || |||| ||||| || || || || | || || Sbjct 1444721 GACACCATTGAAAACG-TCAAGACCAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 1444779 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| || || ||||| | || |||| | || || ||||||||| Sbjct 1444780 ACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGACGGCAGAACTCTTTCCGACTACAA 1444839 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| |||| || ||||| || Sbjct 1444840 CATCCAAAAGGAGTCCACTCTCCATCTTGT 1444869 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || ||||| || | || || || |||||||| | || ||||| | | Sbjct 1445117 ATGCAAATCTTTGTAAAGACATTAACTGGTAAGACCATCACTCTTGAAGTCGAGGGATCT 1445176 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| || || | ||||| || || || || | || || Sbjct 1445177 GACACCATTGAAAATGTCAAAACCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAA 1445236 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || || || ||||| || |||| | || || |||||||||| Sbjct 1445237 CAACGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCAGAACTCTTTCCGACTACAAC 1445296 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| |||| || ||||| || Sbjct 1445297 ATCCAAAAGGAGTCCACTCTCCATCTCGT 1445325 >seq24 Length=3408800 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || || ||||||||| |||| ||||||| || Sbjct 192865 ATGCAAATTTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTCGAAGTCGAAGGATCC 192806 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| ||||| || |||| ||||| || || ||||| | || || Sbjct 192805 GACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATCAA 192746 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || || ||||| | || |||| | || | ||||||||| Sbjct 192745 CAACGTCTTATCTTTGCCGGTAAACAATTAGAAGACGGCAGAACTTTGTCGGACTACAAC 192686 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| |||| || ||||| || Sbjct 192685 ATCCAAAAGGAATCCACTCTCCATCTCGT 192657 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || ||||||||| || || ||||| | || || |||||||| ||| | || || |||| Sbjct 193097 AACAATGCAAATCTTTGTTAAAACATTAACAGGTAAAACCATTACCTTGGAAGTAGAAGG 193038 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | ||| ||||| || |||| ||||| || || ||||| | || Sbjct 193037 CTCTGACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGA 192978 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| ||||| | ||| || ||||| | || || | | |||||| || || Sbjct 192977 TCAACAACGTCTCATTTTCGCCGGTAAACAATTAGAGGATGGTAGAACCCTCTCGGATTA 192918 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||||| |||| || ||||| || Sbjct 192917 CAACATCCAAAAGGAATCCACTCTCCATCTCGT 192885 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| ||||||||| | || ||||||| | Sbjct 192637 ATGCAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACCTTGGAAGTCGAAGGTTCT 192578 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| ||||| || |||| ||||| || || ||||| | || || Sbjct 192577 GACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATCAA 192518 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || || ||||| | || |||| || || || ||| |||||| Sbjct 192517 CAACGTCTCATCTTTGCCGGTAAACAATTAGAAGACGGCCGAACTCTTTCCGATTACAAC 192458 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| | || || ||||| || Sbjct 192457 ATCCAAAAGGAATCTACTCTCCATCTTGT 192429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || || |||||||| | || ||||| | | Sbjct 192409 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAGACCATCACTCTTGAAGTCGAGGGATCT 192350 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAG-AGGGCATCCCCGCGGACCA 40808 |||| | | ||| ||||| || || | ||||| | | || ||||| | || || Sbjct 192349 GACACCATTGAAAATGTCAAGACCAAGATCCAAGACAAGGGAAGGTATCCCACCTGATCA 192290 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||| | ||| || ||||| | || || | | |||||| || ||||| Sbjct 192289 ACAACGTCTCATTTTCGCCGGTAAACAATTAGAGGATGGTAGAACCCTCTCGGATTACAA 192230 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| ||||| |||| || ||||| || Sbjct 192229 CATCCAAAAGGAATCCACTCTCCATCTCGT 192200 >seq2 Length=1770755 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || | || || || |||||||| | || || |||| Sbjct 949053 AAACATGCAGATCTTCGTTAAGACTTTAACAGGAAAGACCATCACTCTTGAAGTTGAAGG 948994 Query 40746 CACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | || | | | | ||||| |||||| || || | ||||| || || ||||| | | Sbjct 948993 TTCAGATACCATCGAAAACG-TCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCCG 948935 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | || ||||| || |||| || || || || || || |||| || |||||| || | Sbjct 948934 ATCAACAACGTCTTATCTTTGCCGGTAAGCAACTCGAAGACGGTCGTACCCTCTCGGATT 948875 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| ||||| | || || ||||| || | ||| | || || || Sbjct 948874 ACAACATCCAAAAGGAATCTACCCTCCATCTCGTTCTCCGCCTTAGAGGTGG 948823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219038994000