Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq21 113 4e-20 seq24 102 7e-17 >seq21 Length=1919465 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| ||||||||||| || ||| | |||||| || || Sbjct 1352132 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCT 1352073 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || |||||||| |||| ||||| || ||||| || || || || ||||||||| | Sbjct 1352072 AATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGA 1352013 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | ||| || | | || ||||| | ||| | || || Sbjct 1352012 ATCTTAGCCTTTACATTTTCAATGGTATCAGATCCTTCAACCTCCAAGGTGATGGTCTTA 1351953 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || ||||||||||||||||| |||||| Sbjct 1351952 CCAGTAAGAGTTTTTACAAAAATTTGCATG 1351923 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || ||||||||||||||||| || ||| | || |||| Sbjct 1444640 CAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCGA 1444581 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| ||||| || ||||| || || || || ||||||||| | Sbjct 1444580 GCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGA 1444521 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | |||| ||||| | | |||||| || | || | || |||| Sbjct 1444520 TCTTGGTCTTGACATTCTCGATAGTGTCAGATCCCTCGACTTCAAGAGTGATGGTCTTGC 1444461 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || ||||| || ||||| Sbjct 1444460 CGGTCAATGTCTTGACAAAGATTTGCAT 1444433 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || ||||||||||||||||| || ||| | || || | Sbjct 1444412 CAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCCA 1444353 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||| || || | |||||||| || ||||| || || || || ||||||||| | Sbjct 1444352 ATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGA 1444293 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | ||| | ||||| | | || ||||| | ||| | || || | Sbjct 1444292 TCTTGGTCTTGACATTTTCAATAGTGTCAGAACCTTCAACCTCCAAGGTAATGGTCTTAC 1444233 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATT-CTATTA 118752 | || | ||||||||||||||| |||||| || || |||||| Sbjct 1444232 CAGTTAAAGTTTTTACAAAAATTTGCATGATTTGTTACTATTA 1444190 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || |||||||| || || | |||| || || || ||||||||||| || ||| Sbjct 1352836 TACCACCACGTAATCTTAATACGAGATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGG 1352777 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| | || || | || |||||||| |||| ||||| || ||||| || | Sbjct 1352776 ACAAAGTTCTTCCGTCTTCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTG 1352717 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| ||| || || || | |||| ||||| | | || | Sbjct 1352716 GAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCGATAGTGTCGGATCCTTCAA 1352657 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || ||||| | || |||||||| || ||||| Sbjct 1352656 CTTCAAGAGTGATGGTCTTACCGGTTAATGTCTTTACAAAGATTTGCAT 1352608 >seq24 Length=3408800 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||||| || ||||| |||||||||||| | ||| || || || | Sbjct 192430 CAAGATGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCTA 192489 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||| || || |||||||||| || ||||| || || || || ||||||||| || Sbjct 192490 ATTGTTTACCGGCAAAGATGAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAA 192549 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | ||||| ||||| | | ||||| || | ||| | || |||| Sbjct 192550 TCTTGGTCTTGACATTTTCGATAGTGTCAGAACCTTCGACTTCCAAGGTGATGGTCTTGC 192609 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || ||||| || ||||| Sbjct 192610 CGGTCAATGTCTTGACAAAGATTTGCAT 192637 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || ||||||||||||||||| | || | |||||| | Sbjct 191973 CAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGAGAGGGTTCTGCCATCCTCTA 192032 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||| || || |||| ||||| || ||||| || || || || ||||||||| || Sbjct 192033 ATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAA 192092 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||||| | ||| | |||||| | | ||||| || | || | || || | Sbjct 192093 TCTTGGTCTTAACGTTTTCAATGGTGTCGGATCCTTCGACTTCAAGAGTGATGGTCTTAC 192152 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || || ||||| |||||||| Sbjct 192153 CAGTCAATGTCTTGACAAAGATCTGCAT 192180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || || ||||| ||||||||||| | || | |||||| | ||| Sbjct 192891 TGGAGAGTGGATTCCTTTTGGATGTTGTAATCCGAGAGGGTTCTACCATCCTCTAATTGT 192950 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| | |||||||| || ||||| || || || || ||||||||| ||| || Sbjct 192951 TTACCGGCGAAAATGAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAATCTTG 193010 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | ||||| ||||| | || || || || | ||| | ||||| || || Sbjct 193011 GTCTTGACATTTTCGATAGTGTCAGAGCCTTCTACTTCCAAGGTAATGGTTTTACCTGTT 193070 Query 118716 AGAGTTTTTACAAAAATCTGCATGGCTTATT 118746 | ||||| ||||| || ||||| | || || Sbjct 193071 AATGTTTTAACAAAGATTTGCATTGTTTTTT 193101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830267817300