Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5 136 4e-27 >seq5 Length=4166812 Score = 136 bits (150), Expect = 4e-27 Identities = 211/298 (71%), Gaps = 9/298 (3%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| ||||| || ||||| | |||||||| | ||| || |||||||| ||||| || || Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAG--CGGCAAATGAACCAGAAAAG 16351 ||||||||| || || || || || | |||||| || | | | || | |||| || Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACT--ACCACTGAAA 871739 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 || ||||||||||| |||||||| || ||||| || || | ||| | || | || Sbjct 871738 AAGATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACG----ACTTGGAGTT 871683 Query 16412 tct-atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGC 16470 | |||||| | |||||| | ||||||| || ||||| || | || ||||| Sbjct 871682 GGTAATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGC 871623 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTA 16528 ||||||||| |||||||| | || | |||||| ||||| |||| ||||||| Sbjct 871622 ATTAAATAATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 Score = 105 bits (116), Expect = 6e-18 Identities = 186/269 (69%), Gaps = 3/269 (1%) Strand=Plus/Minus Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||||| |||| ||||||||||| || || || || ||||||||||| || ||||| ||| Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | |||||| |||||||| ||| | || | ||||||||| || || ||||| Sbjct 871420 TCAGGTATTTGAACTTCAGACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATCA 871361 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGT-- 16702 || || ||||| || | || | || ||||| | ||| || || | || | Sbjct 871360 GAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCATTGTCATTCAATTTA 871301 Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762 || ||| || | ||| ||| ||||| | |||||| | |||||||| || Sbjct 871300 TTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTGCC 871241 Query 16763 ACAGCCTTTTTATACATTTTCCATATGTC 16791 | |||||||||||||| ||||| || || Sbjct 871240 TCTGCCTTTTTATACATATTCCAAATATC 871212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511855465000