Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 >seq5 Length=4166812 Score = 104 bits (114), Expect = 2e-17 Identities = 203/298 (68%), Gaps = 9/298 (3%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||| || ||||| || || || || | ||| || | ||||| ||||| || | Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 |||||||| | || || || || | |||||| || | | ||| || || || Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAA 871737 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 || || ||||| || ||||| |||| || ||||| ||||||| || ||| | Sbjct 871736 GATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGAC---TTGGAGTTGGT 871680 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 |||||| | |||||| |||| |||||| || | | | || |||||||| ||||| Sbjct 871679 AATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATT 871620 Query 14443 AAATAAATGTTCCTTCTCTTTA---GTACTTGAAATGTATGTATCAATAAGTAAGCTA 14497 |||||| | |||| | || | | | || ||| ||||||||||| | ||| ||| Sbjct 871619 AAATAA---TACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 Score = 98.7 bits (108), Expect = 1e-15 Identities = 204/302 (68%), Gaps = 9/302 (3%) Strand=Plus/Minus Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 ||||| ||||||| || || ||||| || || || ||||||||||| |||||||| ||| Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 || | ||| || || || || | ||| | ||||| || || ||||||||| Sbjct 871420 TCAGGTATTTGAACTTCAGACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATCA 871361 Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---CTGAGT 14671 || || ||||| ||||||| || || |||||| || ||||||| | | | Sbjct 871360 GAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAG---TGACGTTCATTGTCATTCAAT 871304 Query 14672 TTTTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14728 || || ||| ||| | ||| | | | ||| | || || |||||||||| || Sbjct 871303 TTATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTT 871244 Query 14729 GCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAAT 14788 || | || ||||||||||| ||| || || ||||| || || || | |||||| Sbjct 871243 GCCTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAAT 871184 Query 14789 CT 14790 || Sbjct 871183 CT 871182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345449267000