Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq21 116 3e-21 seq24 111 1e-19 >seq21 Length=1919465 Score = 116 bits (128), Expect = 3e-21 Identities = 171/240 (71%), Gaps = 9/240 (4%) Strand=Plus/Minus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 ||| |||| || || |||| ||| | ||| | || || |||||||| ||||||||||| Sbjct 1352842 TTTAGTTA-CCACCACGTAATCTTAATACGAGATGGAGAGTTGATTCCTTTTGAATGTTA 1352784 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 ||||||| || ||| | | ||||| ||||| || || ||| ||||||| | ||||||| Sbjct 1352783 TAGTCGGACAAAGTTCTTCCGTCTTCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGA 1352724 Query 18210 TCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCG 18269 || || | |||||||| || ||| | |||||| | | | |||||| Sbjct 1352723 TCAGGTGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCGATAGTGTC---- 1352668 Query 18270 GGCTCGGT----TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || | ||||| |||||| | || ||||| ||||| |||||||| |||||||| Sbjct 1352667 GGATCCTTCAACTTCAAGAGTGATGGTCTTACCGGTTAATGTCTTTACAAAGATTTGCAT 1352608 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| |||||||||||||| || | || ||| | | ||||| | || Sbjct 1444635 TGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCGAGCTGC 1444576 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAAT-TTG 18241 ||||| ||| ||||||| | ||||||||| || | |||||||| || || ||| Sbjct 1444575 TTGCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTTG 1444516 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 | |||||| | | | ||||||| |||| ||||| |||||| | |||||||| Sbjct 1444515 GT-CTTGACATTCTCGATAGTGTCAGATCCCTCGACTTCAAGAGTGATGGTCTTGCCGGT 1444457 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 |||||| || ||||| |||||||| Sbjct 1444456 CAATGTCTTGACAAAGATTTGCAT 1444433 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| |||||||||||||| || | || ||| | | |||||||||||| Sbjct 1444407 TGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCCAATTGT 1444348 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC-GGCAATTTG 18241 || || ||| | || || | ||||||||| || | |||||||| || | | ||| Sbjct 1444347 TTACCGGCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTTG 1444288 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 | |||||| | | ||| ||||||| || || | ||| ||| | || || || Sbjct 1444287 GT-CTTGACATTTTCAATAGTGTCAGAACCTTCAACCTCCAAGGTAATGGTCTTACCAGT 1444229 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 || |||||||||||||||||||| Sbjct 1444228 TAAAGTTTTTACAAAAATTTGCAT 1444205 Score = 98.7 bits (108), Expect = 8e-16 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| ||||| || ||||||||||| ||||||| | || || ||| Sbjct 1352135 AGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCT 1352076 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || ||||| || || ||| ||||||| | ||||||||| || | |||||||| || Sbjct 1352075 TCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCT 1352016 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||| || | | ||| || ||| || || | ||||||| | Sbjct 1352015 TGAATCTTAGCCTTTACATTTTCAATGGTATCAGATCCTTCAACCTCCAAGGTGATGGTC 1351956 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT-TTTTAA 18331 || || || | |||||||||||||||||||| |||||| Sbjct 1351955 TTACCAGTAAGAGTTTTTACAAAAATTTGCATGTTTTAA 1351917 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || || || ||||| |||||||||||||| || | | Sbjct 1445115 CCACCACGGAGACGAAGGACGAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGAC 1445056 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||||||||||| || ||| | || || | ||||||||| || Sbjct 1445055 AAAGTTCTGCCGTCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGTGGA 1444996 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| ||| | |||||| | ||| |||||| ||| Sbjct 1444995 ATACCTTCCTTGTCTTGAATCTTGGT-CTTGACATTCTCAATGGTGTCAGATCCCTCAAC 1444937 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| | || || || | || |||||||| |||||||| Sbjct 1444936 TTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTTACAAAGATTTGCAT 1444889 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/238 (70%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 ||| |||| || || || || | || || | || || || || || ||||| |||||| Sbjct 1445351 TTTAGTTA-CCACCACGGAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTG 1445293 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 ||||||| | ||| | | ||||| | || || || ||| ||||||| | ||||||| Sbjct 1445292 TAGTCGGAAAGAGTTCTGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGA 1445233 Query 18210 TCCACGGGCACGCCTTCCTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCAC 18267 || || | |||||||| || || || ||| ||||| | | ||| |||||| Sbjct 1445232 TCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGTT--TTGACATTTTCAATGGTGTCAG 1445175 Query 18268 CGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| |||||| | || || || ||||| |||||||| |||||||| Sbjct 1445174 ATCCCTCGACTTCAAGAGTGATGGTCTTACCAGTTAATGTCTTTACAAAGATTTGCAT 1445117 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || || ||||| ||||||||||||| | ||| | | ||||| |||||| Sbjct 1444863 TGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTGCCGTCTTCTAATTGT 1444804 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAAT-TTG 18241 || || ||| ||||||| | ||||||||| || | |||||||| || ||| ||| Sbjct 1444803 TTACCGGCAAAGATAAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTG 1444744 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCGGTTTCAATGGTGATGCTTTTGCCG 18299 | |||||| | | ||| |||| ||| | ||| ||| | ||||||| | || || Sbjct 1444743 GT-CTTGACGTTTTCAATGGTGT--CCGAACCTTCGACTTCGAGGGTGATGGTCTTACCA 1444687 Query 18300 GTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || ||||| |||||||| Sbjct 1444686 GTGAGGGTCTTGACAAAGATTTGCAT 1444661 >seq24 Length=3408800 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || || || ||||| ||||| |||||||| |||| Sbjct 192411 CCACCACGGAGACGAAGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAA 192470 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||| |||||||| || ||| |||| || | ||||||||| || Sbjct 192471 AGAGTTCGGCCGTCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGATCAGGTGGG 192530 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| ||| | |||||| | | | | ||||||| ||| Sbjct 192531 ATACCTTCCTTGTCTTGAATCTTGGT-CTTGACATTTTCGATAGTGTCAGAACCTTCGAC 192589 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||||| | |||||||||||||| || ||||| |||||||| Sbjct 192590 TTCCAAGGTGATGGTCTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 192637 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| ||||| ||||||||||| | || ||| | | ||||| |||||| Sbjct 192663 TGGAGAGTGGATTCCTTTTGGATGTTGTAGTCCGACAAAGTTCTGCCGTCTTCTAATTGT 192722 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAAT-TTG 18241 || || ||| ||||||| | ||||||||| || | |||||||| || ||| ||| Sbjct 192723 TTACCGGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAATCTTG 192782 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 | |||||| | | | | |||||| ||| ||| | ||||||| | || || || Sbjct 192783 GT-CTTGACATTTTCGATAGTGTCGGATCCTTCGACTTCGAGGGTGATGGTCTTACCAGT 192841 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | || || |||||||||||||| Sbjct 192842 GAGGGTCTTGACAAAAATTTGCAT 192865 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| |||||||||||||| || | | ||| | | ||| || |||||| Sbjct 191978 TGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGAGAGGGTTCTGCCATCCTCTAATTGT 192037 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAAT-TTG 18241 || || ||| ||||||| | ||||||||| || | |||||||| || ||| ||| Sbjct 192038 TTACCGGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAATCTTG 192097 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 | ||| || | | ||| ||||| ||| ||||| |||||| | || || || Sbjct 192098 GT-CTTAACGTTTTCAATGGTGTCGGATCCTTCGACTTCAAGAGTGATGGTCTTACCAGT 192156 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 |||||| || ||||| || ||||| Sbjct 192157 CAATGTCTTGACAAAGATCTGCAT 192180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343884418625