Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 170 2e-37 seq3 120 4e-22 >seq5 Length=4166812 Score = 170 bits (188), Expect = 2e-37 Identities = 223/303 (74%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||||| |||| |||||||| ||||||||||| || ||||| || ||||||||||| || Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAA-TTTTCATTCACTATTCCATC 33988 || | || || ||||| | ||| | | | || || ||||| || || || ||||| Sbjct 871420 TCAGGTATTTGAACTTCAG-ACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATC 871362 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT 34047 | ||| || ||||| |||||||||| || ||||| | ||| | || || | || Sbjct 871361 AGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCAT-TGTCATTCAATT 871303 Query 34048 TATTC---CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 34104 ||||| || || |||| ||| | | | ||| | ||||| |||||||||| || Sbjct 871302 TATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTG 871243 Query 34105 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 ||||||||||||||||||||||||| || || ||||| |||||||| | |||||||| Sbjct 871242 CCTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATC 871183 Query 34165 TAT 34167 ||| Sbjct 871182 TAT 871180 >seq3 Length=2750715 Score = 120 bits (132), Expect = 4e-22 Identities = 559/870 (64%), Gaps = 23/870 (3%) Strand=Plus/Plus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| ||||| || || || |||||||| || | || | || || || ||||| Sbjct 2512999 GCAATCGATGCAAGGTTGCAAACGGCTACTTCGTCGGCTGAAGTGTACTGGATAATCTCG 2513058 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 || || ||||| || | ||||| || | || | ||| || ||||| || || Sbjct 2513059 GTACAGAGATTGGAGCATTGAATAGTGCCAAGGTTCTTTTGGTTGGACTTTTCATTGCAA 2513118 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 || ||||| || || ||| |||| |||||||| || || || || || || || || | Sbjct 2513119 GCGTCCTTGTAGAGGATGTATGGGGTACCAGTCTCGATTTGCGAGTCGATGATGGCAAAC 2513178 Query 63123 CAGACGACTCGAGCCTTTA-----TTATAGATTTGTATCTCCTTTCTCTT-TCGTATAGA 63176 |||| | || | ||||| | ||| | | ||| | ||| ||||| | Sbjct 2513179 CAGAGGTCTTGTGCCTTGACCACCTTACGGGCTA--ATC-CAGGAGTCTGCTCGTAGGAA 2513235 Query 63177 GTATACA-ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGG 63235 || | |||| ||||| ||| || | || | |||||| |||| ||| | || Sbjct 2513236 AGGTAGAGATCGCG-GAACTTGTCGCCGTAGCAATCGGCCAATCCAGGAGCTTCGTTTGG 2513294 Query 63236 ACACATCAACGACCACTCTCCGTCATCC--TTC-ACTCGTTTCATAAAGAGATCAGGAAT 63292 ||| | ||||||||||| || ||| | ||| || |||| |||||||||||| | | Sbjct 2513295 ACAAAACAACGACCACT---CGGCATTCTGTTCGACACGTTCCATAAAGAGATCGGATAC 2513351 Query 63293 CCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 ||| || || ||| || || | | | || || || || ||||||||||| Sbjct 2513352 CCAGAGTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTTTACCGTGGTTCTTTTTAAG 2513411 Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 ||||| ||| | | ||| || || ||||| ||||| | ||| | || | | || Sbjct 2513412 GTCGAGAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGTAGACAGCAAACGCACCCTT 2513471 Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 | ||| ||| || || || | || | || || | ||| | || | | |||||| Sbjct 2513472 TCTCTTGCCTCCACCTTGGTCGACATAACGGGCAGTATCGTTAAACACACGTAGCATTGG 2513531 Query 63473 AATAATACCGTTTGATA-TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT 63531 | | |||| ||| || |||| ||||| || ||||||| || |||||| || | Sbjct 2513532 CACCAAACCG-TTGCTAGTACCGTTGGTTCCACGGATATAGGATCGTGCGGCACGGATCT 2513590 Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 | | | | ||| || || || || | || || || | || ||| | || | || Sbjct 2513591 TGTGCACGGCGATACCAATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTTGAGCG 2513650 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 ||||||| || ||||| || || || |||| | | || ||||| || ||||||| Sbjct 2513651 TGTCATAAATACCTTCGATCGAGTCGTCCTTCATCTGCACGAGGAAACAACTCGACATTT 2513710 Query 63652 GGTGACGAG-TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 | | |||| | || || || ||||| | ||| || | || |||||||| | | Sbjct 2513711 -GAGGCGAGTTGGTGCCAGCGTTAAAGAGGGTTGGGGTGGCATGCGTAAAGTAACGGTTT 2513769 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63769 || | | | | |||||| ||||| || | ||| || || || | || || || | || Sbjct 2513770 GACAATTGGTCGTACGTGTCAATGGCAGCGTCAATGTCGTCACCG-TGGATACCAAGTGA 2513828 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTC 63799 ||||||||| |||| ||| || || | ||| Sbjct 2513829 GACACGCATCAACAAGTGTTGGGGACGTTC 2513858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817403182000